advance.landscape | Code components to simulate a landscape |
allelecount.landscape | Calculate allele numbers (frequency in the statistical sense) at each locus in each population |
allelefreq.landscape | Calculate allele frequencies at each locus in each population |
carry.landscape | Code components to simulate a landscape |
demography.landscape | Calculate demographic parameters |
exp.het.landscape | Calculate expected heterozygosity |
extinct.landscape | Code components to simulate a landscape |
Fst.landscape | Calculates population structure statistic for the entire landscape |
FWright.landscape | Calculates Wright's Fixation index at each locus in each population |
is.landscape | Test whether an object is a (fairly) legitimate landscape |
island | rmetasim landscape containing an island migration structure |
landscape.locus | return a matrix containing genotypes for a particular locus |
landscape.states | return a matrix containing actual genotypes for a particular locus |
landscape.to.rtheta | Converts genetic marker data in a landscape into a format suitable for analysis using ANOVA |
locusvec | Provides convenient summarys of locus characteristics |
new.epoch | Create an Epoch |
new.epoch.island | Create an Island Model Epoch |
new.example.landscape | Create a Default Landscape |
new.floatparam.land | Create a set of floating point parameters |
new.individuals | Fill a landscape with individuals |
new.intparam.land | Create a set of integer parameters |
new.landscape.empty | Create a Skeletal Landscape |
new.local.demo | Create a Local Demography |
new.locus | Add a locus |
new.switchparam.land | Create a set of boolean parameters |
obs.het.landscape | Calculate observed heterozygosity |
ploidy | Provides convenient summarys of locus characteristics |
popstruct | Calculates Weir and Cokerham's theta |
populations | return a vector of population IDs from a landscape |
read.landscape | Load a landscape from a file |
reproduce.landscape | Code components to simulate a landscape |
simulate.landscape | Run a simulation for a single landscape through time |
states | return a matrix containing actual genotypes for a particular locus |
survive.landscape | Code components to simulate a landscape |
theta.h.landscape | Calculate theta using heterozygosity |
theta.k.landscape | Calculate theta using the number of alleles |
theta.s.landscape | Calculate theta using segregating sites |
write.landscape | Save a landscape to a file |
write.landscape.foreign | Save a landscape to a file in a foreign format |