gbk2g2 {seqinr} | R Documentation |
This function reads a file in GenBank format and converts the features corresponding to CDS (Coding Sequences) into a format similar to glimmer program output.
gbk2g2(gbkfile = "ftp://pbil.univ-lyon1.fr/pub/logiciel/oriloc/ct.gbk", g2.coord = "g2.coord")
gbkfile |
The name of the GenBank file |
g2.coord |
The name of the glimmer-like file |
Partial CDS (either 5' or 3') and join in features are discarded.
J.R. lobry
To have an overview of the seqinR's functionnality, please consult this vignette:
Charif, D., Lobry, J.R. (2005) SeqinR: a contributed package to the R project for statistical
computing devoted to biological sequences retrieval and analysis. Springer Verlag, Biological and Medical Physics/Biomedical Series, in preparation.
## Not run: gbk2g2()