getType {seqinr}R Documentation

To Get Sequence Type

Description

This function allows to get all the sequence's type present in the opened ACNUC databank.

Usage

getType(socket)

Arguments

socket An object of class connection returned by choosebank.

Value

It returns a list containing for each sequence type, a short description.

Author(s)

D. Charif

References

  To have an overview of the seqinR's functionnality, please consult this vignette: Charif, D., Lobry, J.R. (2005) SeqinR: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis. Springer Verlag, Biological and Medical Physics/Biomedical Series, in preparation.

See Also

choosebank, query, plot.SeqAcnucWeb

Examples

## Not run: s = choosebank("genbank")
## Not run: geType(s$socket) 

[Package seqinr version 1.0-2 Index]