getTrans {seqinr} | R Documentation |
Methods for the class of sequences: SeqFastadna
, SeqFastaAA
, SeqAcnucWeb
, SeqFrag
.
getTrans(seq, frame = 0, sens = "F", numcode = 1)
seq |
an object of class SeqFastadna , SeqFastaAA , SeqAcnucWeb or SeqFrag . |
frame |
Frame(s) (0,1,2) to translate. By default the frame 0 is used. |
sens |
Sense to translate: F for forward sense and R for revers sense. |
numcode |
The number of the code to use. By default the standard genetic code is used. |
a vector of chars containing the sequence
D. Charif
To have an overview of the seqinR's functionnality, please consult this vignette:
Charif, D., Lobry, J.R. (2005) SeqinR: a contributed package to the R project for statistical
computing devoted to biological sequences retrieval and analysis. Springer Verlag, Biological and Medical Physics/Biomedical Series, in preparation.
methods(getTrans)