anova.CNVassoc | Association analysis between a CNV and phenotype |
cnv | CNV object |
CNVassoc | Association analysis between a CNV and phenotype |
cnvBatches | CNV object |
cnvDefault | CNV object |
CNVtest | Testing association between a CNV and phenotype |
fastCNVassoc | Fast association analysis between a CNV or imputed SNPs and phenotype for case-control and cohort GWA studies. |
fastCNVinter | Fast epistasis (pairwise interaction) analysis between two CNV or imputed SNPs for case-control and cohort GWA studies. |
getProbs | Get posterior probabilities from an object of class 'cnv' or 'CGHcall' |
getProbs.cghCall | Get posterior probabilities from an object of class 'cnv' or 'CGHcall' |
getProbs.cnv | Get posterior probabilities from an object of class 'cnv' or 'CGHcall' |
getProbsRegions | Get posterior probabilities for blocks/regions |
getPvalBH | Corrected p values using Benjamini & Hochberg approach |
getQualityScore | Computes a quality score for a CNV fit |
getQualityScore.cnv | Computes a quality score for a CNV fit |
getQualityScore.default | Computes a quality score for a CNV fit |
is.cnv | CNV object |
logLik.CNVassoc | Association analysis between a CNV and phenotype |
multiCNVassoc | Association between several CNVs and disease |
plot.cnv | CNV object |
plotSignal | plots the intensities of a CNV univariate signal data |
print.anova.CNVassoc | Association analysis between a CNV and phenotype |
print.cnv | CNV object |
print.CNVassoc | Association analysis between a CNV and phenotype |
print.CNVtest | Testing association between a CNV and phenotype |
print.QualityScore | Computes a quality score for a CNV fit |
print.summary.CNVassoc | Association analysis between a CNV and phenotype |
simCNVdataBinary | Simulation of CNV and discrete traits |
simCNVdataCaseCon | Simulation of CNV in a case-control study design |
simCNVdataNorm | Simulation of CNV and quantitative traits |
simCNVdataPois | Simulate Poisson data |
simCNVdataWeibull | Simulate of CNV and a right censored Weibull distributed trait |
summary.CNVassoc | Association analysis between a CNV and phenotype |