Tools for processing COPAS large-particle flow cytometer data


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Documentation for package ‘COPASutils’ version 0.1.6

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COPASutils-package COPASutils - Easy reading, processing, and manipulation of COPAS BIOSORT data.
BioSorter BioSorter
bubbleSVMmodel_noProfiler bubbleSVMmodel_noProfiler
COPASutils COPASutils - Easy reading, processing, and manipulation of COPAS BIOSORT data.
doseData doseData
edgeEffect Detect edge effects on 96-well plates
extractTime Set time to relative
fillWells Fill in any missing well rows with NA values
plateData1 plateData1
plateData2 plateData2
plotCompare Visualize and compare values and distributions across multiple plates
plotCorMatrix Plot a correlation matrix within a plate or between plates
plotDR Plot a dose response curve by strain across a plate
plotDR_allTraits Plot dose response curves for all traits
plotTrait Create faceted plots for every well in a 96-well plate
presentation presentation
readPlate Read in the sorter data with minimal processing
readSorter Read in raw sorter data
removeWells Remove wells from a data frame representing a plate
summarizePlate Condense all objects examined to appropriate well