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| GMCM-package | Fast optimization of Gaussian Mixture Copula Models |
| choose.theta | Heuristically chosen starting value of theta |
| dmvnormal | Multivariate Gaussian probability density function and simulation |
| EMAlgorithm | EM algorithm for Gaussian mixture models |
| fit.full.GMCM | Unsupervised clustering using a general GMCM |
| fit.full.gmcm | Unsupervised clustering using a general GMCM |
| fit.meta.GMCM | Reproducibility/meta analysis using GMCMs |
| fit.meta.gmcm | Reproducibility/meta analysis using GMCMs |
| freshVsFrozen | Reproduciblity between Fresh and Frozen B-cell subtypes |
| full2meta | Convert between parameter formats |
| get.IDR | Posterior class propbabilites and local, and adjusted IDR. |
| get.idr | Posterior class propbabilites and local, and adjusted IDR. |
| get.prob | Posterior class propbabilites and local, and adjusted IDR. |
| GMCM | Fast optimization of Gaussian Mixture Copula Models |
| is.theta | Check if parameters are valid |
| meta2full | Convert between parameter formats |
| rmvnormal | Multivariate Gaussian probability density function and simulation |
| rtheta | Get random parameters for the Gaussian mixture (copula) model |
| SimulateGMCMData | Simulation from the Gaussian mixture (copula) model |
| SimulateGMMData | Simulation from the Gaussian mixture (copula) model |
| u133VsExon | Reproduciblity between U133 plus 2 and Exon microarrays |
| Uhat | Fast ranking function |