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| MetaDE-package | MetaDE: Microarray meta-analysis for differentially expressed gene detection |
| count.DEnumber | Count the number of differentially expressed (DE) genes |
| draw.DEnumber | A function to plot the number of DE genes against FDR obtained from the Meta-analysis. |
| heatmap.sig.genes | A function to plot the heatmap of DE genes detectred at a given FDR threshold from the Meta-analysis. |
| ind.analysis | Identify differentially expressed genes in each individual dataset |
| ind.cal.ES | Calculate the effect sizes |
| Match.gene | Match the probeIds to gene symbol |
| MetaDE | MetaDE: Microarray meta-analysis for differentially expressed gene detection |
| MetaDE.ES | Identify differentially expressed genes by combining effect sizes |
| MetaDE.filter | A function to filter genes |
| MetaDE.match | Match the probeIds to gene symbol |
| MetaDE.merge | Merge microarray data sets |
| MetaDE.minMCC | Identify differentially expressed genes by integrating multiple studies(datasets) using minMCC approach |
| MetaDE.pvalue | Identify differentially expressed genes by combining p-values |
| MetaDE.rawdata | Identify differentially expressed genes by integrating multiple studies(datasets) |
| MetaDE.Read | Read data sets into R |