Data Exchange Between R and LabKey Server


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Documentation for package ‘Rlabkey’ version 2.1.127

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Rlabkey-package Exchange data between LabKey Server and R
getFolderPath Reutrns the folder path associated with a session
getLookups Get related data fields that are available to include in a query on a given query object
getRows Retrieve data from LabKey Server
getSchema Returns an object representing a Labkey schema
getSession Creates and returns a LabKey Server session
labkey.acceptSelfSignedCerts Convenience method to configure Rlabkey connections to accept self-signed certificates
labkey.curlOptions Returns the current set of Curl options that are being used in the existing session
labkey.deleteRows Delete rows of data from a LabKey database
labkey.executeSql Retrieve data from a LabKey Server using SQL commands
labkey.getDefaultViewDetails Retrieve the fields of a LabKey query view
labkey.getFolders Retrieve a list of folders accessible to the current user
labkey.getLookupDetails Retrieve detailed information on a LabKey query
labkey.getQueries Retrieve a list of available queries for a specified LabKey schema
labkey.getQueryDetails Retrieve detailed information on a LabKey query
labkey.getQueryViews Retrieve a list of available named views defined on a query in a schema
labkey.getSchemas Retrieve a list of available schemas from a labkey database
labkey.importRows Import rows of data into a LabKey Server
labkey.insertRows Insert new rows of data into a LabKey Server
labkey.makeRemotePath Build a file path to data on a remote machine
labkey.saveBatch Save an assay batch object to a labkey database
labkey.selectRows Retrieve data from a labkey database
labkey.setCurlOptions Modify the current set of Curl options that are being used in the existing session
labkey.updateRows Update existing rows of data in a labkey database
lsFolders List the available folder paths
lsProjects List the projects available at a given Labkey Server address
lsSchemas List the available schemas
makeFilter Builds filters to be used in labkey.selectRows and getRows
Rlabkey Exchange data between LabKey Server and R
RlabkeyUsersGuide Open the Rlabkey Users Guide
saveResults Returns an object representing a Labkey schema