compendiumdb-package | A database and R package for storing and analyzing gene expression data |
compendiumdb | A database and R package for storing and analyzing gene expression data |
connectDatabase | Create connection with the MySQL compendium database |
createESET | Create a Bioconductor ExpressionSet |
downloadGEOdata | Download a GSE from GEO |
GDSforGSE | Retrieve the GDS ID for a given GSE ID |
GSEforGPL | Retrieve the GSE ID for a given GPL ID |
GSEinDB | Check presence of GSEs in compendium database |
GSMdescriptions | List sample annotation of samples in an experiment |
loadDatabaseSchema | Load the compendium database schema |
loadDataToCompendium | Load GSE into the compendium database |
removeGSE | Remove series record from compendium database |
tagExperiment | Tag an experiment with text labels |
updatePhenoData | Update the phenotypic data of a set of samples |