Interface utilities, parallel computing methods and additional distributions for MCMC models in JAGS


[Up] [Top]

Documentation for package ‘runjags’ version 1.2.1-0

Help Pages

A C D E F L N P R S T X

runJAGS-package Interface utilities for Just Another Gibbs Sampler (JAGS) using parallel and distributed computing
runjags-package Interface utilities for Just Another Gibbs Sampler (JAGS) using parallel and distributed computing

-- A --

as.jags The 'runjags' class (and associated classes) and available S3 methods
as.jags.default The 'runjags' class (and associated classes) and available S3 methods
as.jags.runjags The 'runjags' class (and associated classes) and available S3 methods
as.mcmc.list.runjags The 'runjags' class (and associated classes) and available S3 methods
as.mcmc.runjags The 'runjags' class (and associated classes) and available S3 methods
as.runjags The 'runjags' class (and associated classes) and available S3 methods
as.runjags.default The 'runjags' class (and associated classes) and available S3 methods
as.runjags.jags The 'runjags' class (and associated classes) and available S3 methods
ask Obtain Input from User With Error Handling
autoextend.JAGS Run or Extend a User Specified Bayesian MCMC Model in JAGS with Automatically Calculated Run Length and Convergence Diagnostics
autoextend.jags Run or Extend a User Specified Bayesian MCMC Model in JAGS with Automatically Calculated Run Length and Convergence Diagnostics
autorun.JAGS Run or Extend a User Specified Bayesian MCMC Model in JAGS with Automatically Calculated Run Length and Convergence Diagnostics
autorun.jags Run or Extend a User Specified Bayesian MCMC Model in JAGS with Automatically Calculated Run Length and Convergence Diagnostics
autorun.JAGSfile Deprecated functions
autorun.jagsfile Deprecated functions

-- C --

combine.MCMC Combine Two or More MCMC Objects Into One Longer MCMC Object
combine.mcmc Combine Two or More MCMC Objects Into One Longer MCMC Object

-- D --

dump.format Conversion Between a Named List and a Character String in the R Dump Format

-- E --

extend.JAGS Run or Extend a User Specified Bayesian MCMC Model in JAGS from Within R
extend.jags Run or Extend a User Specified Bayesian MCMC Model in JAGS from Within R

-- F --

failedjags The 'runjags' class (and associated classes) and available S3 methods
findJAGS Attempt to Locate a JAGS Install
findjags Attempt to Locate a JAGS Install

-- L --

list.format Conversion Between a Named List and a Character String in the R Dump Format
load.runJAGSmodule Load the internal JAGS module provided by runjags
load.runjagsmodule Load the internal JAGS module provided by runjags

-- N --

new_unique Create a Unique Filename

-- P --

plot.runjags The 'runjags' class (and associated classes) and available S3 methods
plot.runjags.bginfo The 'runjags' class (and associated classes) and available S3 methods
plot.runjags.plots The 'runjags' class (and associated classes) and available S3 methods
print.crosscorr.stats The 'runjags' class (and associated classes) and available S3 methods
print.dic.stats The 'runjags' class (and associated classes) and available S3 methods
print.gelman.with.target The 'runjags' class (and associated classes) and available S3 methods
print.mcse.stats The 'runjags' class (and associated classes) and available S3 methods
print.runjags The 'runjags' class (and associated classes) and available S3 methods
print.runjags.bginfo The 'runjags' class (and associated classes) and available S3 methods
print.runjags.data The 'runjags' class (and associated classes) and available S3 methods
print.runjags.inits The 'runjags' class (and associated classes) and available S3 methods
print.runjags.model The 'runjags' class (and associated classes) and available S3 methods
print.runjags.output The 'runjags' class (and associated classes) and available S3 methods
print.runjags.plots The 'runjags' class (and associated classes) and available S3 methods
print.runjags.study The 'runjags' class (and associated classes) and available S3 methods

-- R --

read.WinBUGS Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a Winbugs Type Textfile
read.winbugs Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a Winbugs Type Textfile
results.JAGS Run or Extend a User Specified Bayesian MCMC Model in JAGS from Within R
results.jags Run or Extend a User Specified Bayesian MCMC Model in JAGS from Within R
run.JAGS Run or Extend a User Specified Bayesian MCMC Model in JAGS from Within R
run.jags Run or Extend a User Specified Bayesian MCMC Model in JAGS from Within R
run.JAGS.study Run an MCMC Model in JAGS Using Multiple Simulated Datasets
run.jags.study Run an MCMC Model in JAGS Using Multiple Simulated Datasets
run.JAGSfile Deprecated functions
run.jagsfile Deprecated functions
runJAGS Interface utilities for Just Another Gibbs Sampler (JAGS) using parallel and distributed computing
runjags Interface utilities for Just Another Gibbs Sampler (JAGS) using parallel and distributed computing
runJAGS-class The 'runjags' class (and associated classes) and available S3 methods
runjags-class The 'runjags' class (and associated classes) and available S3 methods
runJAGS.bginfo-class The 'runjags' class (and associated classes) and available S3 methods
runjags.bginfo-class The 'runjags' class (and associated classes) and available S3 methods
runJAGS.bginfoclass The 'runjags' class (and associated classes) and available S3 methods
runjags.bginfoclass The 'runjags' class (and associated classes) and available S3 methods
runJAGS.data-class The 'runjags' class (and associated classes) and available S3 methods
runjags.data-class The 'runjags' class (and associated classes) and available S3 methods
runJAGS.dataclass The 'runjags' class (and associated classes) and available S3 methods
runjags.dataclass The 'runjags' class (and associated classes) and available S3 methods
runJAGS.getOption Options for the runjags package
runjags.getOption Options for the runjags package
runJAGS.model-class The 'runjags' class (and associated classes) and available S3 methods
runjags.model-class The 'runjags' class (and associated classes) and available S3 methods
runJAGS.modelclass The 'runjags' class (and associated classes) and available S3 methods
runjags.modelclass The 'runjags' class (and associated classes) and available S3 methods
runJAGS.options Options for the runjags package
runjags.options Options for the runjags package
runJAGS.plots-class The 'runjags' class (and associated classes) and available S3 methods
runjags.plots-class The 'runjags' class (and associated classes) and available S3 methods
runJAGS.plotsclass The 'runjags' class (and associated classes) and available S3 methods
runjags.plotsclass The 'runjags' class (and associated classes) and available S3 methods
runJAGS.study-class The 'runjags' class (and associated classes) and available S3 methods
runjags.study-class The 'runjags' class (and associated classes) and available S3 methods
runJAGS.studyclass The 'runjags' class (and associated classes) and available S3 methods
runjags.studyclass The 'runjags' class (and associated classes) and available S3 methods
runJAGSclass The 'runjags' class (and associated classes) and available S3 methods
runjagsclass The 'runjags' class (and associated classes) and available S3 methods
runJAGSpackage Interface utilities for Just Another Gibbs Sampler (JAGS) using parallel and distributed computing
runjagspackage Interface utilities for Just Another Gibbs Sampler (JAGS) using parallel and distributed computing

-- S --

summary.runjags The 'runjags' class (and associated classes) and available S3 methods

-- T --

testJAGS Analyse the System to Check That JAGS Is Installed
testjags Analyse the System to Check That JAGS Is Installed
timestring Calculate the Elapsed Time in Sensible Units

-- X --

xapply Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.autoextend.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.autoextend.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.autorun.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.autorun.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.autorun.JAGSfile Deprecated functions
xgrid.autorun.jagsfile Deprecated functions
xgrid.delete Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.extend.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.extend.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.jobs Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.results Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.results.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.results.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.run Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.run.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.run.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.run.JAGSfile Deprecated functions
xgrid.run.jagsfile Deprecated functions
xgrid.submit Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.submit.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.submit.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.submit.JAGSfile Deprecated functions
xgrid.submit.jagsfile Deprecated functions