Graph Estimation Based on Birth-Death MCMC Approach


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Documentation for package ‘BDgraph’ version 2.18

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BDgraph-package Graph selection based on birth-death MCMC
BDgraph Graph selection based on birth-death MCMC
bdgraph Birth-death MCMC sampling algorithm for graphical models
bdgraph.npn Nonparametric transfer
bdgraph.sim Synthetic graph data generator
CellSignal A flow cytometry dataset
compare Comparing the result
geneExpression Human gene expression dataset
phat Posterior link probabilities
plot.bdgraph Plot function for 'S3' class '"bdgraph"'
plot.simulate Plot function for 'S3' class '"simulate"'
plotcoda Convergence plot
plotroc ROC plot
print.bdgraph Print function for 'S3' class '"bdgraph"'
print.simulate Print function for 'S3' class '"simulate"'
prob Posterior probabilities of the graphs
rgwish Sampling from G-Wishart distribution
rwish Sampling from Wishart distribution
select Selecting the best graph
summary.bdgraph Summary function for 'S3' class '"bdgraph"'
surveyData Labor force survey data
traceplot Trace plot of graph size