Tools for the provision of scientific fisheries management advice


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Documentation for package ‘kobe’ version 1.3.2

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kobe-package Tools for provide scientific fisheries advice
assmt Example Datasets
dRate dRate
hinge incr
iav iav
incr incr
kobe ~~ Methods for Function 'kobe' in Package 'kobe' ~~
kobe-method ~~ Methods for Function 'kobe' in Package 'kobe' ~~
kobe2box Reads pro2box projection results and returns stock and harvest rate relative to MSY reference points or proxies.
kobeAspic Reads ASPIC bootstraps and projections and returns stock and harvest rate relative to MSY reference points
kobeDens kobeDens
kobeFreq kobeFreq
kobeInterp Methods to generate the Kobe II Strategy Matrix.
kobeInterp-method Methods to generate the Kobe II Strategy Matrix.
kobeInterp-methods Methods to generate the Kobe II Strategy Matrix.
kobeMFCL Reads Multifan-CL assessment results and returns stock and harvest rate relative to MSY reference points
kobeP Calculates whether each point corresponds to being over-fished or subject to over-fishing and being in the red, green or yellow regions of the kobe phase plots quadrants.
kobeP-methods Calculates whether each point corresponds to being over-fished or subject to over-fishing and being in the red, green or yellow regions of the kobe phase plots quadrants.
kobePhase kobePhase
kobePhase-method kobePhase
kobePhaseMar Kobe Phase Plot with Marginal Densities
kobeProb kobeProb
kobeShade Shades matrix depending on value of elements
kobeShade-method Shades matrix depending on value of elements
kobeShade-methods Shades matrix depending on value of elements
kobeSmry Creates Summaries i.e. probability of being in the green quadrant
kobeSmry-method Creates Summaries i.e. probability of being in the green quadrant
kobeSS Reads SS assessment results and returns stock and harvest rate relative to MSY reference points
kobeSS3 Reads SS3 results and returns stock and harvest rate relative to MSY reference points
kobeTrks Creates tracks for plotting on phase plot
kobeTrks-method Creates tracks for plotting on phase plot
multiplot Calculates confidence intervals for different probabiity levels for pairs of data points.
prj Example Datasets
prj1 Example Datasets
recovered recovered
sims Example Datasets
theme_ms ggplot2 theme