Entrez in R


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Documentation for package ‘rentrez’ version 0.4.1

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rentrez-package rentrez
entrez_citmatch Fetch pubmed ids from specially formatted citation strings
entrez_dbs List databases avaliable from the NCBI
entrez_db_links Can be used in conjunction with 'entrez_link' to find the right name for the 'db' argument in that function.
entrez_db_searchable Can be used in conjunction with 'entrez_search' to find available search fields to include in the 'term' argument of that function.
entrez_db_summary Retrieve summary information about an NCBI database
entrez_fetch Download data from NCBI databases
entrez_global_query See how many hits there are for a given term across all NCBI Entrez databases
entrez_info Get infromation about EUtils databases
entrez_link Get links to datasets related to a unique ID from an NCBI database
entrez_post Post IDs to Eutils for later use
entrez_search Search the NCBI databases using EUtils
entrez_summary Get summaries of objects in NCBI datasets from a unique ID Constructs a query from the given arguments, including a database name and list of of unique IDs for that database.
parse_pubmed_xml Summarise an XML record from pubmed.
rentrez rentrez