Miscellaneous Esoteric Statistical Scripts

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Documentation for package ‘MESS’ version 0.4-3

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MESS-package Collection of miscellaneous useful and semi-useful functions
adaptive.weights Compute weights for use with adaptive lasso.
age Compute the age of a person from two dates.
auc Compute the area under the curve for two vectors.
bdstat Danish live births and deaths
bees Bee data. Number of different types of bees caught.
clotting Blood clotting for 158 rats
cmd Correlation matrix distance
col.alpha Add and set alpha channel for RGB color
col.shade Shade an RGB color
col.tint Tint an RGB color
common.shared Compute a common shared environment matrix
common.shared.pedigree Compute a common shared environment matrix
common.shared.pedigreeList Compute a common shared environment matrix
drop1.geeglm Drop All Possible Single Terms to a geeglm Model Using Wald Test
earthquakes Earthquakes in 2015
extended.shared Compute a common shared environment matrix
extended.shared.pedigree Compute a common shared environment matrix
extended.shared.pedigreeList Compute a common shared environment matrix
fac2num Convert factor to numeric vector
feature.test Inference for features identified by the Lasso
filldown Fill down NA with the last observed observation
geekin Fit a generalized estimating equation (GEE) model with fixed additive correlation structure
gkgamma Goodman-Kruskal's gamma statistic for a two-dimensional table
greenland Average yearly summer air temperature for Tasiilaq, Greenland
happiness Happiness score and tax rates for 148 countries
ht Show the head and tail of an object
icecreamads Ice cream consumption and advertising
kwdata Non-parametric Kruskal Wallis data example
lifeexpect Estimated life expectancy for Danish newborns
lower.tri.vector Split Matrix by Clusters and Return Lower Triangular Parts as Vector
matched Flu hospitalization
MESS Collection of miscellaneous useful and semi-useful functions
mfastLm_cpp Fast marginal simple regresion analyses
nh4 Ammonia nitrogen found in river
ordered.clusters Check if unique elements of a vector appear in contiguous clusters
panel.hist Panel plot of histogram and density curve
panel.r2 Panel plot of R2 values for pairs
picea Ozone concentration damage to picea spruce
power.binom.test Power Calculations for Exact Test of a simple null hypothesis in a Bernoulli experiment
power.mcnemar.test Power Calculations for Exact and Asymptotic McNemar Test in a 2 by 2 table
power.t.test Power calculations for one and two sample t tests with unequal sample size
print.geekin Fit a generalized estimating equation (GEE) model with fixed additive correlation structure
qdiag Fast extraction of matrix diagonal
QIC Quasi Information Criterion
QIC.geeglm Quasi Information Criterion
QIC.geekin Quasi Information Criterion
QIC.ordgee Quasi Information Criterion
qpcr Gene expression from real-time quantitative PCR
quadform Fast quadratic form computation
rainman Perception of points in a swarm
repmat Fast replication of a matrix
residualplot Plots a standardaized residual
residualplot.default Plots a standardaized residual
residualplot.lm Plots a standardaized residual
rmvt.pedigree Simulate residual multivariate t-distributed data from a polygenic model
rmvtnorm.pedigree Simulate residual multivariate Gaussian data from a polygenic model
rootogram Hanging rootogram for normal distribution
rootonorm Hanging rootogram for normal distribution
scorefct Internal functions for the MESS package
segregate.genes Segregate genes through a pedigree
sinv Invert a symmetric positive-definite matrix
smokehealth Effect of smoking on self reported health
soccer Danish national soccer players
superroot2 Gene expression data from two-color dye-swap experiment
tracemp Fast computation of trace of matrix product
wallyplot Plots a Wally plot
wallyplot.default Plots a Wally plot
wallyplot.lm Plots a Wally plot
write.xml Write a data frame in XML format