'Taxonomic' Specification and Parsing Methods


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Documentation for package ‘binomen’ version 0.1.0

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binomen-package Taxonomic class specification and parsing methods
assemble Scatter each taxon in a taxondf to a taxon object
assemble.taxa Scatter each taxon in a taxondf to a taxon object
binomen Taxonomic class specification and parsing methods
binomial A class to represent a taxonomic binomial
gethier Get hierarchy as a data.frame
grouping A class to represent a taxonomic classification
make_taxon Make taxon from class
make_taxon_fromclass Make taxon from class
name Pick out parts by name
name.taxon Pick out parts by name
name.taxonref Pick out parts by name
parts Pick out parts by name
pick Pick names
pop Pop names out
rank Pick out parts by name
rank.taxon Pick out parts by name
rank.taxonref Pick out parts by name
rank_table Lookup-table for IDs of taxonomic ranks
scatter Scatter each taxon in a taxondf to a taxon object
span Parse taxon or taxondf objects by a range of names
strain Parse taxon or taxondf objects by a range of names
taxa A class to represent a list of taxa
taxon A class to represent a single taxon
taxonid Pick out parts by name
taxonid.taxon Pick out parts by name
taxonid.taxonref Pick out parts by name
taxonref A class to represent a taxonomic reference
taxonrefs A class to represent a list of taxonomic references
taxon_classes Taxonomic class methods
taxon_df Taxon data.frame
uri Pick out parts by name
uri.taxon Pick out parts by name
uri.taxonref Pick out parts by name