Bayesian Regression Models using Stan


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Documentation for package ‘brms’ version 0.10.0

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A B C E F G H I K L M N P R S U V W Z

brms-package Bayesian Regression Models using Stan

-- A --

acat Special Family Functions for 'brms' Models
as.data.frame.brmsfit Extract posterior samples
as.data.frame.brmsVarCorr Extract variance and correlation components
as.matrix.brmsfit Extract posterior samples
as.mcmc Extract posterior samples for use with the 'coda' package
as.mcmc.brmsfit Extract posterior samples for use with the 'coda' package

-- B --

bernoulli Special Family Functions for 'brms' Models
Beta Special Family Functions for 'brms' Models
brm Fit Bayesian Generalized (Non-)Linear Multilevel Models
brmdata Data for 'brms' Models
brms Bayesian Regression Models using Stan
brmsfamily Special Family Functions for 'brms' Models
brmsfit Class 'brmsfit' of fitted mixed-effect models
brmsfit-class Class 'brmsfit' of fitted mixed-effect models

-- C --

categorical Special Family Functions for 'brms' Models
cauchy Special Family Functions for 'brms' Models
coef.brmsfit Extract model coefficients
cor.ar AR(p) correlation structure
cor.arma ARMA(p,q) correlation structure
cor.ma MA(q) correlation structure
cor_ar AR(p) correlation structure
cor_arma ARMA(p,q) correlation structure
cor_arr ARR(r) correlation structure
cor_brms Correlation structure classes for the 'brms' package
cor_brms-class Correlation structure classes for the 'brms' package
cor_bsts Basic Bayesian Structural Time Series
cor_bsts-class Basic Bayesian Structural Time Series
cor_fixed Fixed user-defined covariance matrices
cor_ma MA(q) correlation structure
cratio Special Family Functions for 'brms' Models
cumulative Special Family Functions for 'brms' Models

-- E --

epilepsy Epileptic seizure counts
exponential Special Family Functions for 'brms' Models
expose_functions Expose user-defined 'Stan' functions
expose_functions.brmsfit Expose user-defined 'Stan' functions

-- F --

fitted.brmsfit Extract Model Fitted Values of 'brmsfit' Objects
fixef Extract Population-Level Estimates
fixef.brmsfit Extract Population-Level Estimates

-- G --

geometric Special Family Functions for 'brms' Models
get_prior Overview on Priors for 'brms' Models

-- H --

hurdle_gamma Special Family Functions for 'brms' Models
hurdle_negbinomial Special Family Functions for 'brms' Models
hurdle_poisson Special Family Functions for 'brms' Models
hypothesis Non-linear hypothesis testing
hypothesis.brmsfit Non-linear hypothesis testing

-- I --

inhaler Clarity of inhaler instructions

-- K --

kidney Infections in kidney patients

-- L --

launch_shiny Interface to 'shinystan'
launch_shiny.brmsfit Interface to 'shinystan'
logLik.brmsfit Compute the pointwise log-likelihood
lognormal Special Family Functions for 'brms' Models
LOO Compute LOO
LOO.brmsfit Compute LOO

-- M --

make_stancode Stan Code for 'brms' Models
make_standata Data for 'brms' Models
marginal_effects Display marginal effects of predictors
marginal_effects.brmsfit Display marginal effects of predictors

-- N --

negbinomial Special Family Functions for 'brms' Models
ngrps Number of levels
ngrps.brmsfit Number of levels

-- P --

pairs.brmsfit Create a matrix of output plots from a 'brmsfit' object
par.names Extract Parameter Names
par.names.brmsfit Extract Parameter Names
parnames Extract Parameter Names
parnames.brmsfit Extract Parameter Names
plot.brmsfit Trace and Density Plots for MCMC Samples
plot.brmshypothesis Non-linear hypothesis testing
plot.brmsMarginalEffects Display marginal effects of predictors
posterior.samples Extract posterior samples
posterior.samples.brmsfit Extract posterior samples
posterior_samples Extract posterior samples
posterior_samples.brmsfit Extract posterior samples
predict.brmsfit Model Predictions of 'brmsfit' Objects
print.brmsfit Print a summary for a fitted model represented by a 'brmsfit' object
print.brmshypothesis Non-linear hypothesis testing
print.brmssummary Print a summary for a fitted model represented by a 'brmsfit' object
prior_samples Extract prior samples
prior_samples.brmsfit Extract prior samples

-- R --

ranef Extract Group-Level Estimates
ranef.brmsfit Extract Group-Level Estimates
residuals.brmsfit Extract Model Residuals from brmsfit Objects

-- S --

set_prior Prior Definitions for 'brms' Models
sratio Special Family Functions for 'brms' Models
stancode Extract Stan Model Code
stancode.brmsfit Extract Stan Model Code
standata Extract Data passed to Stan
standata.brmsfit Extract Data passed to Stan
stanplot Various Plotting Functions implemented in 'rstan'
stanplot.brmsfit Various Plotting Functions implemented in 'rstan'
student Special Family Functions for 'brms' Models
summary.brmsfit Create a summary of a fitted model represented by a 'brmsfit' object

-- U --

update.brmsfit Update 'brms' models

-- V --

VarCorr Extract variance and correlation components
VarCorr.brmsfit Extract variance and correlation components
vcov.brmsfit Covariance and Correlation Matrix of Population-Level Effects

-- W --

WAIC Compute the WAIC
WAIC.brmsfit Compute the WAIC
weibull Special Family Functions for 'brms' Models

-- Z --

zero_inflated_beta Special Family Functions for 'brms' Models
zero_inflated_binomial Special Family Functions for 'brms' Models
zero_inflated_negbinomial Special Family Functions for 'brms' Models
zero_inflated_poisson Special Family Functions for 'brms' Models