popgraph-package |
Package for the creation of population graph objects |
-.popgraph |
Overload '-' operator for pairs of 'popgraph' objects |
alt |
Sonoran desert altitude. |
arapat_mv |
Araptus attenuatus data |
arapat_pop |
Arapat popualtion data |
as.popgraph |
Converts an object of type matrix or igraph into 'popgraph' |
baja |
Metadata for Baja Populations. |
centroid_distance |
This function takes a data set and a group set and returns centroid distances |
centroid_variance |
This function takes a data set and a group set and returns centroid variances |
congruence_topology |
Returns congruence topology |
decorate_graph |
Merge data into popgraph node-wise |
geom_edgelabels |
Plotting of a population graph edge labels using ggplot neumonic |
geom_edgeset |
Plotting of a population graph edge set using ggplot neumonic |
geom_nodeset |
Plotting of a population graph edge set using ggplot neumonic |
lopho |
Lophocereus population graph |
overlay_popgraph |
Convience function to plot edges from 'popgraph' |
permute_popgraph |
Bootstraps indiviudals to see stability of graph topology. |
popgraph |
Default constructor for a 'PopulationGraph' object |
read.popgraph |
Reads in a population graph text file |
test_congruence |
Returns distance congruence between the two graphs |
theme_empty |
A blank theme for plotting networks |
to_data.frame |
Converts 'popgraph' to 'data.frame' based upon node attributes |
to_html |
Converts population graph to html file for interactive viewing |
to_json |
Converts to json representation |
to_kml |
Converts population graph to KML file |
to_matrix |
Matrix conversion for Population Graph |
to_pgraph |
Converts graph to a pgraph file format |
to_SpatialLines |
Converts edge set to SpatialLines object |
to_SpatialPoints |
Translate object into a SpatialPoints object |
upiga |
Upiga population graph |
write_popgraph |
Convience function for file exports |