This is an R package that constructs and manipulates population graphs.


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Documentation for package ‘popgraph’ version 1.4

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popgraph-package Package for the creation of population graph objects
-.popgraph Overload '-' operator for pairs of 'popgraph' objects
alt Sonoran desert altitude.
arapat_mv Araptus attenuatus data
arapat_pop Arapat popualtion data
as.popgraph Converts an object of type matrix or igraph into 'popgraph'
baja Metadata for Baja Populations.
centroid_distance This function takes a data set and a group set and returns centroid distances
centroid_variance This function takes a data set and a group set and returns centroid variances
congruence_topology Returns congruence topology
decorate_graph Merge data into popgraph node-wise
geom_edgelabels Plotting of a population graph edge labels using ggplot neumonic
geom_edgeset Plotting of a population graph edge set using ggplot neumonic
geom_nodeset Plotting of a population graph edge set using ggplot neumonic
lopho Lophocereus population graph
overlay_popgraph Convience function to plot edges from 'popgraph'
permute_popgraph Bootstraps indiviudals to see stability of graph topology.
popgraph Default constructor for a 'PopulationGraph' object
read.popgraph Reads in a population graph text file
test_congruence Returns distance congruence between the two graphs
theme_empty A blank theme for plotting networks
to_data.frame Converts 'popgraph' to 'data.frame' based upon node attributes
to_html Converts population graph to html file for interactive viewing
to_json Converts to json representation
to_kml Converts population graph to KML file
to_matrix Matrix conversion for Population Graph
to_pgraph Converts graph to a pgraph file format
to_SpatialLines Converts edge set to SpatialLines object
to_SpatialPoints Translate object into a SpatialPoints object
upiga Upiga population graph
write_popgraph Convience function for file exports