Fast Estimation of Gaussian Mixture Copula Models


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Documentation for package ‘GMCM’ version 1.2.1

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GMCM-package Fast optimization of Gaussian Mixture Copula Models
choose.theta Heuristically chosen starting value of theta
dmvnormal Multivariate Gaussian density and simulation
EMAlgorithm EM algorithm for Gaussian mixture models
fit.full.GMCM Unsupervised clustering using a general GMCM
fit.full.gmcm Unsupervised clustering using a general GMCM
fit.meta.GMCM Reproducibility/meta analysis using GMCMs
fit.meta.gmcm Reproducibility/meta analysis using GMCMs
freshVsFrozen Reproducibility between Fresh and Frozen B-cell subtypes
full2meta Convert between parameter formats
get.IDR Posterior class probabilities, local, and adjusted IDRs.
get.idr Posterior class probabilities, local, and adjusted IDRs.
get.prob Posterior class probabilities, local, and adjusted IDRs.
GMCM Fast optimization of Gaussian Mixture Copula Models
is.theta Check if parameters are valid
meta2full Convert between parameter formats
rmvnormal Multivariate Gaussian density and simulation
rtheta Get random parameters for the Gaussian mixture (copula) model
SimulateGMCMData Simulation from the Gaussian mixture (copula) model
SimulateGMMData Simulation from the Gaussian mixture (copula) model
u133VsExon Reproducibility between U133 plus 2 and Exon microarrays
Uhat Fast ranking function