GMCM-package |
Fast optimization of Gaussian Mixture Copula Models |
choose.theta |
Heuristically chosen starting value of theta |
dmvnormal |
Multivariate Gaussian density and simulation |
EMAlgorithm |
EM algorithm for Gaussian mixture models |
fit.full.GMCM |
Unsupervised clustering using a general GMCM |
fit.full.gmcm |
Unsupervised clustering using a general GMCM |
fit.meta.GMCM |
Reproducibility/meta analysis using GMCMs |
fit.meta.gmcm |
Reproducibility/meta analysis using GMCMs |
freshVsFrozen |
Reproducibility between Fresh and Frozen B-cell subtypes |
full2meta |
Convert between parameter formats |
get.IDR |
Posterior class probabilities, local, and adjusted IDRs. |
get.idr |
Posterior class probabilities, local, and adjusted IDRs. |
get.prob |
Posterior class probabilities, local, and adjusted IDRs. |
GMCM |
Fast optimization of Gaussian Mixture Copula Models |
is.theta |
Check if parameters are valid |
meta2full |
Convert between parameter formats |
rmvnormal |
Multivariate Gaussian density and simulation |
rtheta |
Get random parameters for the Gaussian mixture (copula) model |
SimulateGMCMData |
Simulation from the Gaussian mixture (copula) model |
SimulateGMMData |
Simulation from the Gaussian mixture (copula) model |
u133VsExon |
Reproducibility between U133 plus 2 and Exon microarrays |
Uhat |
Fast ranking function |