GillespieSSA-package |
Gillespie Stochastic Simulation Algorithm package |
GillespieSSA |
Gillespie Stochastic Simulation Algorithm package |
ssa |
Invoking the stochastic simulation algorithm |
ssa.btl |
Binomial tau-leap method (BTL) |
ssa.btl.diag |
Binomial tau-leap method (BTL) for nu-diagonalized systems |
ssa.check.args |
Validates the arguments for the ssa wrapper function |
ssa.check.method |
Validates consistency of the system definition |
ssa.d |
Direct method (D) |
ssa.d.diag |
Direct method (D) for nu-diagonalized systems |
ssa.etl |
Explicit tau-leap method (ETL) |
ssa.etl.diag |
Explicit tau-leap method (ETL) for nu-diagonalized systems |
ssa.nutiling |
Direct method nu-diagonalization mapping |
ssa.otl |
Optimized tau-leap method (OTL) |
ssa.otl.diag |
Optimized tau-leap method (OTL) for nu-diagonalized systems |
ssa.plot |
Simple plotting of ssa output |
ssa.run |
Higher-level interface to the method functions |
ssa.terminate |
Terminates a simulation that was invoked using ssa |