Access to the Neotoma Paleoecological Database Through R


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Documentation for package ‘neotoma’ version 1.2-0

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bind Function to bind objects together into a longer object.
compile_downloads Function to convert multiple downloads into a single large table.
compile_list Deprecated function to convert assemblage taxa to standardized lists.
compile_taxa Function to convert assemblage taxa to standardized lists.
counts Access proxy count data
counts.download Access proxy count data
counts.download_list Access proxy count data
download A class for download objects.
get_chroncontrol Function to return chronological control tables used to build age models.
get_contact Get contact information.
get_contacts Get contact information.
get_dataset Obtain dataset information from the Neotoma Paleoecological Database or an existing object.
get_dataset.default Obtain dataset information from the Neotoma Paleoecological Database or an existing object.
get_dataset.download Obtain dataset information from an existing 'download' object.
get_dataset.download_list Obtain dataset information from a 'download_list'.
get_dataset.geochronologic Obtain dataset information from an object of class 'geochronologic'.
get_dataset.geochronologic_list Obtain dataset information from an object of class 'geochronologic_list'.
get_dataset.site Obtain dataset information from an existing 'site' object.
get_datasets Obtain dataset information from the Neotoma Paleoecological Database.
get_download Function to return full download records using 'site's, 'dataset's, or dataset IDs.
get_download.dataset Function to return full download records using a 'dataset'.
get_download.dataset_list Function to return full download records using a 'dataset_list'.
get_download.default Function to return full download records using 'numeric' dataset IDs.
get_download.site Function to return full download records using a 'site'.
get_geochron Function to return geochronological data from records.
get_publication A function to get publications for sites or datasets in the Neotoma Database using the API.
get_publication.dataset A function to get publications for datasets in the Neotoma Database using the API.
get_publication.dataset_list A function to get publications for dataset_lists in the Neotoma Database using the API.
get_publication.default A function to get publications for sites or datasets in the Neotoma Database using the API.
get_publication.download A function to get publications for downloads in the Neotoma Database using the API.
get_publication.download_list A function to get publications for datasets in the Neotoma Database using the API.
get_site Return Site Information.
get_site.dataset Return Site Information from a 'dataset'
get_site.dataset_list Return Site Information from a 'dataset_list'
get_site.default Return Site Information.
get_site.download Return Site Information from a 'download'
get_site.download_list Return Site Information from a 'download_list'
get_site.geochronologic Return Site Information from a 'geochronologic'
get_site.geochronologic_list Return Site Information from a 'geochronologic_list'
get_sites Return Site Information.
get_table Get Neotoma value tables.
get_taxa Get taxon information from Neotoma.
gp.table A list of all the geopolitical entities in the Neotoma database.
pollen.equiv A table to convert the pollen taxa identified by investigators to standardized lists.
taxon.list Neotoma taxon list
translate.table A table to convert the original taxa to standardized lists.
write_agefile Write age control file to disk formatted for either Bacon or Clam