Spatial interpolation of genetic data


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Documentation for package ‘phylin’ version 1.0

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phylin-package Phylogenetic Landscape Interpolation.
d.gen Genetic distance matrix between vipers and lineages.
extract.val Extact pairwise values from a matrix in a specified order.
gen.variogram Semi-variogram with the genetic distance matrix
grid Grid centroids for the Iberian Peninsula.
grid.image Simple plot of interpolated grid.
gv.model Fit a model to the semi-variogram.
idw Inverse Distance Weighting interpolation
intgen.idw Interpolation of genetic distances to a a grid of points.
krig Simple and ordinary kriging.
midpoints Midpoints between pairs of coordinates
mpinv Generalized inverse of a matrix
mtest.gv Tests if a 'gv' object has a model.
multispecies Summarizes data from multiple species.
phylin Phylogenetic Landscape Interpolation.
plot.gv Plot 'gv' object
predict.gv Predict method for 'gen.variogram' object with model.
real.dist Real distance matrix for samples and interpolation locations.
summary.gv Summary for 'gv' object
vipers Vipers sample locations for 'd.gen' dataset.