Root System Markup Language (RSML) file processing


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Documentation for package ‘rsml’ version 1.0

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addChildToRoot Add a child root (lateral) to an existing root
addNodeToRoot Add a node to an existing root
addRootToPlant Add a root to an existing plant. Returns the plant with the added root
anagallis Root system of a anagallis plant in 3D
coords Get the coordinates of the root nodes
getInsertionAngle Compute the insertion angle of the root on its parent
getInsertionPosition Compute the insertion of the root on its parent
latLength Compute the length of the lateral root based on the coordinates of its nodes
length.plant Compute the length of the root based on the coordinates of its nodes
length.root Compute the length of the root based on the coordinatres of its nodes
lupin Root system of a lupin plant in 2D
maize Root system of a maize plant in 3D
meanInsertionAngle Compute the mean insertion angle of the children (lateral) roots
meanInsertionAnglePlant Compute the mean insertion angle of all the laterals in the plant
meanInterbranch Compute the mean interbranch distance of the children (lateral) roots
meanInterbranchPlant Compute the mean interbranch distance of all the primary roots in the image
nChild Get the number of children in a root
nLatRoot Compute the number of lateral roots in the plant
nNode Get the number of nodes in a root
node Node constructor
nPrimRoot Compute the number of primary roots in the plant
nRoot Compute the total number of roots in the plant
plant Plant object, containing a root system, composed of roots
plot.plant Plot the root system
primLength Compute the length of the primary root based on the coordinates of its nodes
print.node Print the node
print.plant Print the plant
root Root constructor
rsmlToList Import a single RSML file into a List. Work only if the roots in the rsml file have properties associated with them.
rsmlToPlant Import a single RSML file into a Plant object
summary.plant Summary of the plant
totalLength Compute the length of the root and its children based on the coordinates of its nodes
xrange Compute the xrange of the root
xrangePlant Compute the xrange of the plant
yrange Compute the xrange of the root
yrangePlant Compute the yrange of the plant
zrange Compute the xrange of the root
zrangePlant Compute the zrange of the plant