addChildToRoot |
Add a child root (lateral) to an existing root |
addNodeToRoot |
Add a node to an existing root |
addRootToPlant |
Add a root to an existing plant. Returns the plant with the added root |
anagallis |
Root system of a anagallis plant in 3D |
coords |
Get the coordinates of the root nodes |
getInsertionAngle |
Compute the insertion angle of the root on its parent |
getInsertionPosition |
Compute the insertion of the root on its parent |
latLength |
Compute the length of the lateral root based on the coordinates of its nodes |
length.plant |
Compute the length of the root based on the coordinates of its nodes |
length.root |
Compute the length of the root based on the coordinatres of its nodes |
lupin |
Root system of a lupin plant in 2D |
maize |
Root system of a maize plant in 3D |
meanInsertionAngle |
Compute the mean insertion angle of the children (lateral) roots |
meanInsertionAnglePlant |
Compute the mean insertion angle of all the laterals in the plant |
meanInterbranch |
Compute the mean interbranch distance of the children (lateral) roots |
meanInterbranchPlant |
Compute the mean interbranch distance of all the primary roots in the image |
nChild |
Get the number of children in a root |
nLatRoot |
Compute the number of lateral roots in the plant |
nNode |
Get the number of nodes in a root |
node |
Node constructor |
nPrimRoot |
Compute the number of primary roots in the plant |
nRoot |
Compute the total number of roots in the plant |
plant |
Plant object, containing a root system, composed of roots |
plot.plant |
Plot the root system |
primLength |
Compute the length of the primary root based on the coordinates of its nodes |
print.node |
Print the node |
print.plant |
Print the plant |
root |
Root constructor |
rsmlToList |
Import a single RSML file into a List. Work only if the roots in the rsml file have properties associated with them. |
rsmlToPlant |
Import a single RSML file into a Plant object |
summary.plant |
Summary of the plant |
totalLength |
Compute the length of the root and its children based on the coordinates of its nodes |
xrange |
Compute the xrange of the root |
xrangePlant |
Compute the xrange of the plant |
yrange |
Compute the xrange of the root |
yrangePlant |
Compute the yrange of the plant |
zrange |
Compute the xrange of the root |
zrangePlant |
Compute the zrange of the plant |