Can |
What data-limited methods can be applied to this DLM_data object? |
Cant |
What methods can't be applied to this DLM data object |
CC1 |
Constant catch management procedure of Geromont and Butterworth (2014) |
CC4 |
Constant catch management procedure of Geromont and Butterworth (2014) |
CheckConverg |
MSE convergence diagnostic |
ChooseEffort |
Manually choose the historical relative fishing effort trajectory. |
ChooseSelect |
Manually choose the historical selectivity pattern. |
comp |
Comparison plots for individual simulations |
CompSRA |
Age-composition-based estimate of current stock depletion given constant Z linked to an FMSY estimate to provide OFL. |
CompSRA4010 |
Age-composition-based estimate of current stock depletion given constant Z linked to an FMSY estimate to provide OFL (with a 40-10 rule) |
CSRA |
Catch at size reduction analysis |
CSRAfunc |
Optimization function for CSRA |
curE |
Fishing at current effort levels |
curE75 |
Fishing at 75 per cent of current effort levels |
DAAC |
Depletion Adjusted Average Catch |
DBSRA |
Depletion-Based Stock Reduction Analysis |
DBSRA4010 |
Depletion-Based Stock Reduction Analysis paired with 40-10 harvest control rule |
DBSRA_40 |
Depletion-Based Stock Reduction Analysis assuming 40 per cent stock depletion |
DBSRA_ML |
Depletion-Based Stock Reduction Analysis using mean length estimator of stock depletion |
DCAC |
Depletion Corrected Average Catch |
DCAC4010 |
Depletion Corrected Average Catch paired with the 40-10 rule |
DCAC_40 |
Depletion Corrected Average Catch assuming 40 per cent stock depletion |
DCAC_ML |
Depletion-Based Stock Reduction Analysis using mean-length estimator of current depletion |
DD |
Delay - Difference Stock Assessment with UMSY and MSY leading |
DD4010 |
Delay - Difference Stock Assessment with UMSY and MSY leading coupled with a 40-10 harvest control rule |
DDe |
Effort control version of DD - Delay - Difference Stock Assessment with UMSY and MSY leading |
DDe75 |
Effort control version of DD - Delay - Difference Stock Assessment with UMSY and MSY leading that fishes at 75 per cent of FMSY |
DDes |
Effort searching version of DD - Delay - Difference Stock Assessment with UMSY and MSY leading that fishes at 75 per cent of FMSY |
DepF |
Depletion Corrected Fratio |
DLMdat |
Data and Operating model objects |
DLMDataDir |
Directory of the installed package on your computer |
DLMtool |
Data-Limited Methods Toolkit |
DLM_data-class |
Class '"DLM_data"' |
DLM_fease-class |
Class '"DLM_fease"' |
DLM_general-class |
Class '"DLM_general"' |
DOM |
How dominant is an MP? |
DoOpt |
Optimization routine for LBSPR methods |
DTe40 |
Effort searching MP aiming for 40 per cent stock depletion. |
DTe50 |
Effort searching MP aiming for 50 per cent stock depletion. |
DynF |
Dynamic Fratio MP |
Fadapt |
An adaptive MP that uses trajectory in inferred suplus production and fishing mortality rate to update a TAC |
Fdem |
Demographic FMSY method |
Fdem_CC |
Demographic FMSY method using catch-curve analysis to estimate recent Z |
Fdem_ML |
Demographic FMSY method that uses mean length data to estimate recent Z |
Fease |
MP feasibility diagnostic |
Fease_xl |
Read in feasibility parameters from Excel spreadsheet |
Fleet-class |
Class '"Fleet"' |
FMSYref |
A reference FMSY method (uses perfect information about FMSY) |
FMSYref50 |
A reference FMSY method that fishes at half of FMSY (uses perfect information about FMSY) |
FMSYref75 |
A reference FMSY method that fishes at three quarters of FMSY (uses perfect information about FMSY) |
Fratio |
An FMSY/M ratio method |
Fratio4010 |
An FMSY/M ratio method paired with the 40-10 rule |
Fratio_CC |
A data-limited method that uses FMSY/M ratio and a naive catch-curve estimate of recent Z |
Fratio_ML |
An FMSY/M ratio MP that uses a mean length estimator of recent Z |
initialize-method |
~~ Methods for Function 'initialize' ~~ |
initialize-methods |
~~ Methods for Function 'initialize' ~~ |
Input |
Function to run a set of input control methods |
Islope1 |
A management procedure that incrementally adjusts the TAC to maintain a constant CPUE or relative abundance index. |
Islope4 |
A management procedure that incrementally adjusts the TAC to maintain a constant CPUE or relative abundance index. |
IT10 |
Index Target 10 |
IT5 |
Index Target 5 |
Itarget1 |
A management procedure that incrementally adjusts the TAC (starting from reference level that is a fraction of mean recent catches) to reach a target CPUE / relative abundance index. |
Itarget4 |
A management procedure that incrementally adjusts the TAC (starting from reference level that is a fraction of mean recent catches) to reach a target CPUE / relative abundance index. |
ItargetE1 |
A management procedure that incrementally adjusts the effort to reach a target CPUE / relative abundance index. |
ItargetE4 |
A management procedure that incrementally adjusts the Effort to reach a target CPUE / relative abundance index. |
ITe10 |
Index Target Effort-Based 10 |
ITe5 |
Index Target Effort-Based 5 |
ITM |
Index Target based on natural mortality rate |
L2A |
Length to age conversion |
LBSPR |
Apply LBSPR model to time-series of catch-at-length |
LBSPRSim |
Per-Recruit Length-Based Spawning Potential Ratio Simulation Model |
LBSPR_ItEff |
Length-based SPR model with HCR that iteratively adjusts Effort |
LBSPR_ItSel |
Length-based SPR model with HCR that iteratively adjusts Selectivity. |
LBSPR_ItTAC |
Length-based SPR model with HCR that iteratively adjusts TAC |
lmmodel-class |
Class '"lmmodel"' |
LstepCC1 |
A management procedure that incrementally adjusts the TAC according to the mean length of recent catches. |
LstepCC4 |
A management procedure that incrementally adjusts the TAC according to the mean length of recent catches. |
LstepCE1 |
A management procedure that incrementally adjusts the TAC according to the mean length of recent catches. |
LstepCE2 |
A management procedure that incrementally adjusts the Effort according to the mean length of recent catches. |
Ltarget1 |
A management procedure that incrementally adjusts the TAC to reach a target mean length in catches. |
Ltarget4 |
A management procedure that incrementally adjusts the TAC to reach a target mean length in catches. |
LtargetE1 |
A management procedure that incrementally adjusts the Effort to reach a target mean length in catches. |
LtargetE4 |
A management procedure that incrementally adjusts the Effort to reach a target mean length in catches. |
Sam |
Conduct stock assessment |
SBT1 |
SBT simple MP |
SBT2 |
SBT complex MP |
Sense |
Sensitivity analysis |
SetRecruitCycle |
Function to calculate cyclic recruitment pattern given user-specified values of period and amplitude. |
slotlim |
An data-limited method which sets a slot limit |
SnapMSE |
Example MSE object used in the vignette |
SPmod |
Surplus production based catch-limit modifier |
SPMSY |
Catch trend Surplus Production MSY MP |
SPslope |
Slope in surplus production MP |
SPSRA |
Surplus Production Stock Reduction Analysis |
SPSRA_ML |
Surplus Production Stock Reduction Analysis using a mean-length estimate of current stock depletion |
Stock-class |
Class '"Stock"' |
Sub |
Subset MSE object by management procedure (MP) or simulation. |
summary-method |
~~ Methods for Function 'summary' ~~ |
summary-methods |
~~ Methods for Function 'summary' ~~ |