Diversity Estimator


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Documentation for package ‘DivE’ version 1.0

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DivE-package Diversity Estimator
Bact1 Count of Medically Important Bacteria Species in a Sample
Bact2 Count of Medically Important Bacteria Species in a Sample
BBprop Internal functions
Bfunprop Internal functions
BinFunk Internal functions
BinFunkSingleNumber Internal functions
comb.dm comb.dm
combine.criteria Internal functions
combined.fit Internal functions
convert.ranges Internal functions
crossings Internal functions
Curvature Curvature
div.count Internal functions
DivE Diversity Estimator
DivE-internal Internal functions
DiveMaster DiveMaster
DiveMaster.default DiveMaster
divsamplenum divsamplenum
divsamplenum.default divsamplenum
divsubsamples divsubsamples
divsubsamples.default divsubsamples
divsubsamples_nested Internal functions
fitallSubs Internal functions
fitsample Internal functions
fitsinglemod fitsinglemod
fitsinglemod.default fitsinglemod
format.input Internal functions
gen.rarefac.div Internal functions
gen.rarefac.lengths Internal functions
gen.subsamp.lengths Internal functions
geo.mean Internal functions
global.fit Internal functions
is.mono Internal functions
is.slowing Internal functions
IsWholeNumber Internal functions
local.fit Internal functions
model.cost Internal functions
model.cost.abs Internal functions
ModelSet List of 58 candidate models to fit to data
msr.curves Internal functions
multiple.scoring Internal functions
ParamRanges List of 58 sets of upper and lower bounds for models evaluated by DivE
ParamSeeds List of 58 matrices of model seeding parameters.
plot.fitsingleMod fitsinglemod
popdiversity popdiversity
pred.div Internal functions
print.DiversityMaster DiveMaster
print.divsubsamples divsubsamples
print.fitsingleMod fitsinglemod
print.scoresingleMod scoresinglemod
print.summary.DiversityMaster DiveMaster
print.summary.divsubsamples divsubsamples
print.summary.fitsingleMod fitsinglemod
print.summary.scoresingleMod scoresinglemod
ref.area Internal functions
scoresinglemod scoresinglemod
scoresinglemod.default scoresinglemod
simm Internal functions
single.mod.score Internal functions
single.var Internal functions
summary.DiversityMaster DiveMaster
summary.divsubsamples divsubsamples
summary.fitsingleMod fitsinglemod
summary.scoresingleMod scoresinglemod