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| HMP-package | Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP |
| Barchart.data | A Graphical Representation of Taxa Proportions |
| C.alpha.multinomial | C(alpha) - Optimal Test for Assessing Multinomial Goodness of Fit Versus Dirichlet-Multinomial Alternative |
| Data.filter | A Data Filter |
| Dirichlet.multinomial | Generation of Dirichlet-Multinomial Random Samples |
| DM.MoM | Method-of-Moments (MoM) Estimators of the Dirichlet-Multinomial Parameters |
| formatDataSets | Format Data |
| HMP | Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP |
| kullbackLeiber | Kullback Leiber |
| MC.Xdc.statistics | Size and Power for the Several-Sample DM Parameter Test Comparison |
| MC.Xmc.statistics | Size and Power of Several Sample RAD-Probability Mean Test Comparison |
| MC.Xmcupo.statistics | Size and Power of Several Sample RAD-Probability Mean Test Comparisons: Unknown Vector of Proportion |
| MC.Xoc.statistics | Size and Power of Several Sample-Overdispersion Test Comparisons |
| MC.Xsc.statistics | Size and Power for the One Sample RAD Probability-Mean Test Comparison |
| MC.ZT.statistics | Size and Power of Goodness of Fit Test: Multinomial vs. Dirichlet-Multinomial |
| Multinomial | Generation of Multinomial Random Samples |
| pioest | Weighted Average of Taxa Frequency for Several Groups |
| saliva | Saliva Data Set |
| throat | Throat Data Set |
| tongue | Tongue Data Set |
| tonsils | Palatine Tonsil Data Set |
| Xdc.sevsample | Likelihood-Ratio-Test Statistics: Several Sample Dirichlet-Multinomial Test Comparison |
| Xmc.sevsample | Generalized Wald-type Statistics: Several Sample RAD Probability-Mean Test Comparison with a Known Common Vector |
| Xmcupo.effectsize | Effect Size for Xmcupo Statistic |
| Xmcupo.sevsample | Generalized Wald-type Statistics: Several Sample RAD Probability-Mean Test Comparison with an Unknown Common Vector |
| Xoc.sevsample | Likelihood-Ratio-Test Statistics: Several Sample Overdispersion Test Comparison |
| Xsc.onesample | Generalized Wald-Type Statistics: One Sample RAD Probability-Mean Test Comparison |