Spatial Ecology Miscellaneous Methods


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Documentation for package ‘ecospat’ version 2.0

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ecospat-package Spatial Ecology Miscellaneous Methods
ecospat Spatial Ecology Miscellaneous Methods
ecospat.adj.D2.glm Calculate An Adjusted D2
ecospat.binary.model Generate Binary Models
ecospat.boyce Calculate Boyce Index
ecospat.calculate.pd Calculate Phylogenetic Diversity Measures
ecospat.caleval Calibration And Evaluation Dataset
ecospat.cohen.kappa Cohen's Kappa
ecospat.CommunityEval Community Evaluation
ecospat.cons_Cscore Constrained Co-Occurrence Analysis.
ecospat.cor.plot Correlation Plot
ecospat.co_occurrences Species Co-Occurrences
ecospat.cv.example Cross Validation Example Function
ecospat.cv.gbm GBM Cross Validation
ecospat.cv.glm GLM Cross Validation
ecospat.cv.me Maxent Cross Validation
ecospat.cv.rf RandomForest Cross Validation
ecospat.env Package Environment
ecospat.Epred Prediction Mean
ecospat.ESM.EnsembleModeling Ensamble of Small Models: Evaluates and Averages Simple Bivariate Models To ESMs
ecospat.ESM.EnsembleProjection Ensamble of Small Models: Projects Calibrated ESMs Into New Space Or Time.
ecospat.ESM.Modeling Ensamble of Small Models: Calibration of Simple Bivariate Models
ecospat.ESM.Projection Ensamble of Small Models: Projects Simple Bivariate Models Into New Space Or Time
ecospat.exdet An EXtrapolation DETection Tool For The Modeling Of Species Distributions
ecospat.grid.clim.dyn Dynamic Occurrence Densities Grid
ecospat.makeDataFrame Make Data Frame
ecospat.mantel.correlogram Mantel Correlogram
ecospat.max.kappa Maximum Kappa
ecospat.max.tss Maximum TSS
ecospat.maxentvarimport Maxent Variable Importance
ecospat.mess MESS
ecospat.meva.table Model Evaluation For A Given Threshold Value
ecospat.migclim Implementing Dispersal Into Species Distribution Models
ecospat.mpa Minimal Predicted Area
ecospat.niche.dyn.index Niche Expansion, Stability, and Unfilling
ecospat.niche.equivalency.test Niche Equivalency Test
ecospat.niche.overlap Calculate Niche Overlap
ecospat.niche.similarity.test Niche Similarity Test
ecospat.npred Number Of Predictors
ecospat.occ.desaggregation Species Occurrences Desaggregation
ecospat.permut.glm GLM Permutation Function
ecospat.plot.contrib Plot Variables Contribution
ecospat.plot.kappa Plot Kappa
ecospat.plot.mess Plot MESS
ecospat.plot.niche Plot Niche
ecospat.plot.niche.dyn Niche Categories and Species Density
ecospat.plot.overlap.test Plot Overlap Test
ecospat.plot.tss Plot True skill statistic (TSS)
ecospat.rand.pseudoabsences Sample Pseudo-Absences
ecospat.sample.envar Sample Environmental Variables
ecospat.SESAM.prr SESAM Probability Ranking Rule
ecospat.shift.centroids Draw Centroid Arrows
ecospat.testData Test Data For The Ecospat package
ecospat.testNiche Test Data For The Niche Overlap Analysis
ecospat.testNiche.inv Test Data For The Niche Dynamics Analysis In The Invaded Range Of A Hypothetical Species
ecospat.testNiche.nat Test Data For The Niche Dynamics Analysis In The Native Range Of A Hypothetical Species
ecospat.testTree Test Tree For The Ecospat package
ecospat.varpart Variation Partitioning For GLM Or GAM