gwas.analysis |
Performs GWAS analysis with five optional models and different optional thresholds. |
gwas.cross |
Read genomic data to perform GWAS analyses. |
linkdis.plots |
Linkage Disequilibrium heatmap plot |
mq.g.diagnostics |
Performs molecular markers quality diagnostics. |
pca.analysis |
Principal Component Analysis. |
QA_geno |
Name of the file containing genotypic (marker scores) information. |
QA_map |
Name of the file containing marker map information |
QA_pheno |
Name of the file containing phenotypic information |
QA_sim |
Name of the file containing phenotypic information |