nLTT-package |
Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves |
abc_smc_nltt |
A function to perform Approximate Bayesian Computation within an Sequential Markov Chain (ABC-SMC), for diversification analysis of phylogenetic trees. |
exampleTrees |
example trees to test the functionality of the package |
mcmc_nltt |
Code to perform Metropolis-Hastings MCMC for a diversification model, given a phylogenetic tree. This function was used in the MEE paper to calculate the likelihood reference estimates. |
nLTT |
Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves |
nLTTstat |
Calculate the difference between two normalized Lineage-Through-Time curves, given two phylogenetic trees. |
nLTTstat_exact |
Calculate the exact difference between two normalized Lineage-Through-Time curves, given two phylogenetic trees. |
nltt_lines |
Normalized version of the ape function ltt.lines. |
nltt_plot |
Normalized version of the ape function ltt.plot |