Calculate the 'nLTT' Statistic


[Up] [Top]

Documentation for package ‘nLTT’ version 1.2.1

Help Pages

nLTT-package Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves
abc_smc_nltt A function to perform Approximate Bayesian Computation within an Sequential Markov Chain (ABC-SMC), for diversification analysis of phylogenetic trees.
exampleTrees example trees to test the functionality of the package
mcmc_nltt Code to perform Metropolis-Hastings MCMC for a diversification model, given a phylogenetic tree. This function was used in the MEE paper to calculate the likelihood reference estimates.
nLTT Package providing functions to visualize the normalized Lineage-Through-Time statistic, and calculate the difference between two nLTT curves
nLTTstat Calculate the difference between two normalized Lineage-Through-Time curves, given two phylogenetic trees.
nLTTstat_exact Calculate the exact difference between two normalized Lineage-Through-Time curves, given two phylogenetic trees.
nltt_lines Normalized version of the ape function ltt.lines.
nltt_plot Normalized version of the ape function ltt.plot