Biophysical Oceanography Tools


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Documentation for package ‘ocean’ version 0.2-4

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bathy.colors Generate a sequence of colors for plotting bathymetric data.
filter2d Applies a 2d Gaussian filter to 'mat' with a standard deviation of r cells.
find.elem Checks if the points (xy$x, xy$y) are in the 'fvcom.grid' 'grid'.
find.elem-method Checks if the points (xy$x, xy$y) are in the 'fvcom.grid' 'grid'.
fvcom.grid Create a new FVCOM grid instance from a FVCOM NetCDF output file.
fvcom.grid-class Finite Volume Community Ocean Model grid
get.depth Get the depth at each node in the grid.
get.depth-method Get the depth at each node in the grid.
get.elems Get the indices of the element vertices in the grid.
get.elems-method Get the indices of the element vertices in the grid.
get.nelems Get the number of elements in the grid.
get.nelems-method Get the number of elements in the grid.
get.nnodes Get the number of nodes in the grid.
get.nnodes-method Get the number of nodes in the grid.
get.nodes Get the values of the nodes in the grid.
get.nodes-method Get the values of the nodes in the grid.
get.proj Get the value of the projection string.
get.proj-method Get the value of the projection string.
image Plot a 'fvcom.grid' instance as a heatmap.
image-method Plot a 'fvcom.grid' instance as a heatmap.
interp Convert a single scalar or node based quantity to element based.
interp-method Convert a single scalar or node based quantity to element based.
is.in.grid Checks if the points (xy$x, xy$y) are in the 'fvcom.grid' 'grid'.
is.in.grid-method Checks if the points (xy$x, xy$y) are in the 'fvcom.grid' 'grid'.
jet.colors Generate a sequence of colors alog the jet colormap.
lines Plot an instance of the 'fvcom.grid' class and overlay the trajectories given by 'xy'.
lines-method Plot an instance of the 'fvcom.grid' class and overlay the trajectories given by 'xy'.
loadFVCOMGrid27 Load an FVCOM grid from a NetCDF output file.
ocean.demo.grid An example instance of the 'fvcom.grid' class.
pdd Plot the density of x and y on grid.
pdd-method Plot the density of x and y on grid.
validFVCOMGrid Check if a 'fvcom.grid' instance is valid.