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| Abstracts-class | Class '"Abstracts"' Absract Class |
| alias_fn | To Find Alias of the Genes. |
| altnamesfun | To Get Alternative names of Genes |
| BWI | To Get the Buzz Word Index of terms form the Abstracts. |
| cleanabs | To clean the result of searchabsL |
| cleanabs-method | Methods for Function 'cleanabs' |
| cleanabs-methods | Methods for Function 'cleanabs' |
| cluster_words | To Find the highest frequency of words within clusters |
| combineabs | To combine the abstracts |
| combineabs-method | 'Abstracts' Method to Combine Abstracts |
| combineabs-methods | 'Abstracts' Method to Combine Abstracts |
| common_words_new | R Data containing words which frequently in text |
| contextSearch | For Context Search |
| contextSearch-method | Method for Context Search |
| contextSearch-methods | Method for Context Search |
| cos_sim_calc | To calculate the cosine similarity between terms. |
| cos_sim_calc_boot | Cosine Similarity Calculation by Boot Strapping |
| currentabs_fn | To Retrive the Abstracts for year. |
| Find_conclusion | To find the conclusion from the abstract(s). |
| find_intro_conc_html | To find the introduction and conclusion from the abstracts. |
| genes_BWI | Function to get the Buzz Word Index of Genes from the abstracts. |
| GeneToEntrez | Data containing Entrez Ids |
| Genewise | To Search the number of abstracts for Genes |
| Genewise-method | method to find the abstracts for the given gene. |
| Genewise-methods | method to find the abstracts for the given gene. |
| gene_atomization | To Extract Genes from the Abstracts |
| getabs | To get Abstracts for a given term. |
| getabs-method | 'getabs' To Get abstracts for a term |
| getabs-methods | 'getabs' To Get abstracts for a term |
| getabsT | To get Abstracts for a given term. |
| getabsT-method | To Get Abstracts |
| getabsT-methods | To Get Abstracts |
| get_gene_sentences | To extract the sentences for genes from the corpus. |
| get_NMids | To extract NM ids from NCBI. |
| get_original_term | To get the original terms from the corpus. |
| get_original_term2 | To get the original terms from the corpus. |
| get_PMCIDS | To extract the PMC Ids of the abstracts. |
| get_PMCtable | To fetch the given PMC article. |
| get_Sequences | To extract the Gene sequence from the NCBI. |
| Give_Sentences | To extract sentences from the Abstracts |
| Give_Sentences_PMC | To fetch the sentence from the PMC full text article |
| head_abbrev | To extract the abbreviated term. |
| HGNC-class | HGNC Class for package. |
| HGNC2UniprotID | R Data containing HGNC2UniprotID data mapping. |
| HGNCdata | R Data containing HGNC data. |
| input_for_find_intro_conc_html | fetch the abstracts using E-utilities. |
| local_uniprotfun | To Get Information from Uniprot. |
| names_fn | To extract the gene names from HGNC. |
| official_fn | To extract the official gene symbol. |
| pmids_to_abstracts | To Find and match the PMIDs to the abstracts. |
| previousabs_fn | To Retrive the Abstracts from the large corpus for given years. |
| prevsymbol_fn | To Find Previous symbols of genes. |
| printabs | To prind the total number of abstracts in an S4 object of class Abstracts , its start and end |
| pubtator_function | function for text annotation uisng online PubTator |
| pubtator_result_list_to_table | Function to Convert Pubtator result from list into Table |
| readabs | To read Abstracts |
| ready | To Initiate the Classes. |
| removeabs | To remove abstracts for the query term. |
| removeabs-method | 'removeabs' To remove abstracts of a term from the data. |
| removeabs-methods | 'removeabs' To remove abstracts of a term from the data. |
| searchabsL | To Search the abstracts of term(s) in a combination mode. |
| searchabsL-method | Searching Abstracts |
| searchabsL-methods | Searching Abstracts |
| searchabsT | To Search Abstracts |
| searchabsT-method | 'searchabsT' Searching abstracts |
| searchabsT-methods | 'searchabsT' Searching abstracts |
| sendabs | To send abstracts |
| sendabs-method | To send the Data into a File |
| sendabs-methods | To send the Data into a File |
| SentenceToken | To Tokenize the sentences |
| subabs | To find sub-abstracts |
| subabs-method | Getting subabstracts |
| subabs-methods | Getting subabstracts |
| subsetabs | To make subsets of large corpus. |
| subsetabs-method | To make subset of Abstracts. |
| subsetabs-methods | To make subset of Abstracts. |
| tdm_for_lsa | create Term Document Matrix for lsa analysis |
| uniprotfun | To get information about gene from the UniProt. |
| whichcluster | To fetch the cluster for words |
| wordscluster | To cluster the words |
| wordsclusterview | To view the words in cluster |
| word_atomizations | Atomization of words |
| xmlgene_atomizations | Gene atomization of xml abstracts. |
| xmlreadabs | To read the abstracts from the PubMed saved in XML format. |
| xmlword_atomizations | Word atomizations of abstracts from xml format. |
| Yearwise | To Search abstracts Year wise |
| Yearwise-method | 'Yearwise' Year wise extraction of Abstracts |
| Yearwise-methods | 'Yearwise' Year wise extraction of Abstracts |