ungeneanno-package | Collate Gene Annotation Data from Uniprot and NIH Gene Databases |
gene | An S4 class to represent a gene. |
gene-class | An S4 class to represent a gene. |
geneanno | An S4 class to represent the base information used by the methods. |
geneanno-class | An S4 class to represent the base information used by the methods. |
genematrix | Input Matrix of Drug/Gene Data |
getGeneSummary | Create gene specific objects containing data from online resources |
getGeneSummary-method | Create gene specific objects containing data from online resources |
getGroupGeneList | Create unique list of group,gene combinations from input list |
getGroupGeneList-method | Create unique list of group,gene combinations from input list |
getNihQuery | create initial NIH Query |
getNihQuery-method | create initial NIH Query |
getNihSummary | Gather NIH Gene Data |
getNihSummary-method | Gather NIH Gene Data |
getPublicationList | Gather NIH Pubmed Data |
getPublicationList-method | Gather NIH Pubmed Data |
getUniprotSummary | Gather Uniprot Data |
getUniprotSummary-method | Gather Uniprot Data |
getUniqueGeneList | Create unique list of genes from input list |
getUniqueGeneList-method | Create unique list of genes from input list |
inputlist | Input Vector of Drug/Gene Data |
parseInputFile | Parse files of gene names and group identifiers to create unique lists of each |
parseInputFile-method | Parse files of gene names and group identifiers to create unique lists of each |
produceOutputFiles | Save Gene Information to group Specific Output Files |
produceOutputFiles-method | Save Gene Information to group Specific Output Files |
pubmed | An S4 class to represent a query to the Pubmed database, inherits from 'geneanno' class. |
pubmed-class | An S4 class to represent a query to the Pubmed database, inherits from 'geneanno' class. |
query | An S4 class to represent an initial query to the NCBI e-utilities, inherits from 'geneanno' class. |
query-class | An S4 class to represent an initial query to the NCBI e-utilities, inherits from 'geneanno' class. |
ungeneanno | Collate Gene Annotation Data from Uniprot and NIH Gene Databases |