Drug Repurposing: Integration and Systematic Investigation of Genomic High Throughput Data


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Documentation for package ‘DrInsight’ version 0.1.1

Help Pages

brca.tcga A sample breast cancer gene differential expression analysis t statistic score data
CEG.network.graph Plot The Pathway-CEG Network for A Drug
drug.ident Dr. Insight Drug Identification
drug.info The matrix containing the drug instances information of CMap drug data
example.disease An example gene differential expression analysis test statistic score data
example.drug.profiles An example cmap drug reference profiles
example.pathway example.pathway
get.cmap.ref Read In and Process CMap Reference Profiles
make.cytoscape.network Drug and Pathway connection output files for Cytoscape visulization
network.graph Plot Drug and Pathway Interaction Network
pathway.analysis Drug Mechanism of Action Pathway Analysis
pathway.PID pathway.PID
probe.to.genes The matrix of Affymetrix probe IDs and gene symbols relationship