Preferential Attachment Based Common Neighbor Distribution Derived Functional Associations


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Documentation for package ‘PANDA’ version 0.9.9

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dfPPI An example of protein-protein interaction data
GENE2GOtopLite An example of GO annotation data for proteins
GENE2KEGG An example of KEGG annotation data for proteins
GOpredict Predict GO annotations for proteins
KEGGID2NAME KEGG pathway ID to KEGG pathway name
KEGGpredict Predict KEGG pathway annotations for proteins
ProteinCluster Cluster proteins based on significant protein pairs
SignificantPairs Identify functionally associated protein pairs
SignificantSubcluster Subclusters with KEGG annotations significantly enriched