Magnetic Resonance Binning, Integration and Normalization


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Documentation for package ‘mrbin’ version 1.3.0

Help Pages

.onLoad A function executed when loading this package
atnv A function replacing negative values.
binMultiNMR A function for binning multiple NMR spectra.
binSingleNMR A function for binning a single NMR spectrum.
calculateNoise A function for calculating noise levels.
contMin A function for changing plotNMR plots.
contPlus A function for changing plotNMR plots.
createBinNames A function for creating bin titles.
createBinNumbers A function for creating bin numbers.
createBinRegions A function for creating bin regions.
cropNMR A function for cropping HSQC spectra.
down A function for changing plotNMR plots.
getEnv A function for saving the package environment.
intMin A function for changing plotNMR plots.
intPlus A function for changing plotNMR plots.
left A function for changing plotNMR plots.
logTrafo A function for log transforming data.
mrbin A function setting the parameters and performing binning and data processing
mrbinrun A function performing all data read and processing steps.
plotBins A function for plotting the current bin positions
plotNMR A function for plotting NMR spectra.
plotResults A function for plotting quality indicators, including PCA plots.
PQNScaling A function for PQN scaling.
printParameters A function for printing parameters to the screen.
putToEnv A function for changing and adding variables in the package environment.
readBruker A function for reading Bruker NMR spectra.
readNMR A function for reading NMR spectra.
recreatemrbin A function recreating parameters from previous runs.
referenceScaling A function for scaling to the reference area.
removeAreas A function for removing additional regions.
removeNoise A function for removing bins below noise level.
removeSolvent A function for removing the solvent region.
removeSpectrum A function for removing a spectrum.
resetEnv A parameter resetting function
right A function for changing plotNMR plots.
selectBrukerFolders A function for selecting Bruker NMR data folders.
selectFolders A function for selecting NMR data folders.
setCurrentSpectrum A function for interactively setting the current spectrum.
setFactors A function for setting group members.
setParam A function setting parameters and checking for consistency.
sumBins A function for summing bins.
up A function for changing plotNMR plots.
zoom A function for changing plotNMR plots.
zoomIn A function for changing plotNMR plots.
zoomOut A function for changing plotNMR plots.