Latent Unknown Clustering with Integrated Data


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Documentation for package ‘LUCIDus’ version 1.0.0

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boot_lucid Bootstrap method to estimate variability of latent clusters
CoG Covariate Set in the G->X path
CoY Covariate Set in the X->Y path
def_initial Define initial values of parameters for clustering
def_tol Define maximum number of iteration and convergence
def_tune Define tuning parameters for regularization during integrative clustering
est_lucid Estimating latent clusters with multi-omics data
G1 Genetic Features Set 1
G2 Genetic Features Set 2
plot_lucid Plot Sankey diagram for integrative clustering
pred_lucid Model Predictions for LUCID
sem_lucid SEM for latent cluster estimation
summary_lucid Summarize results for integrative clustering
tune_lucid Parallel Grid Search for Tuning Parameters in Latent Cluster Analysis
Y1 Outcome Set 1
Y2 Outcome Set 2
Z1 Biomarker Set 1
Z1_Incomp Incomplete Biomarker Set 1
Z2 Biomarker Set 2