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| batchCallGeno | Genotyping all sample by chromsome |
| calcFreqFromAd | Calculate the frequcy of AD |
| callGtFromAd | call genotype from AD |
| callWindowGeno | Call genotype by fix-size window |
| fixGenoError | Fix potential genotype error |
| geno | Rice QTL genotype data |
| getAdFromVcf | get the AD from vcf |
| pheno | Rice QTL phenotype data |
| plotGeno | genotype plotting |
| plotQtl | QTL mapping plot |