Optimal Selection of SNPs Using a Unified Local Function


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Documentation for package ‘selectSNPs’ version 1.0.1

Help Pages

as.data.frame Convert a 'Map' Object to a Data Frame
as.Map Convert a Data Frame to a 'Map' Object.
as.Map-method Convert a Data Frame to a 'Map' Object.
bov80K A 'Map' object with 80K bovine SNPs
Chrom The Chromosome class
Chrom-class The Chromosome class
Locus The Locus class
Locus-class The Locus class
Map The Map class
Map-class The Map class
namesOfChrom Extract chromosome indexes or names
namesOfChrom,Chrom Extract chromosome indexes or names
namesOfChrom,Map Extract chromosome indexes or names
namesOfChrom-method Extract chromosome indexes or names
newMap Create a new 'Map' object.
newMap,character Create a new 'Map' object.
newMap,data.frame Create a new 'Map' object.
newMap-method Create a new 'Map' object.
numberOfLoci Extract the number of loci on each chromosome
numberOfLoci,Chrom Extract the number of loci on each chromosome
numberOfLoci,Map Extract the number of loci on each chromosome
numberOfLoci-method Extract the number of loci on each chromosome
plotMap Plotting a Map object.
plotMap-method Plotting a Map object.
scoreE Compute the E score
scoreE,Chrom-methods Compute the E score
scoreE-method Compute the E score
scoreLocal Compute the weighted local score
scoreLocal-method Compute the weighted local score
scoreU Compute the Uniformness(U) score
scoreU-method Compute the Uniformness(U) score
selectLocalOptimalSNPs Select locally-optimized SNPs on one or more chromosomes
selectLocalOptimalSNPs-method Select locally-optimized SNPs on one or more chromosomes
summary Summary statiscs for a Map object.