BEST.kendall |
BLAST type search for similar co-expressions with controlled FDR and MAS using Kendall correlation statistic |
BEST.pearson |
BLAST type search for similar co-expressions with controlled FDR and MAS using Pearson correlation statistic |
cor.confint |
Asymptotic confidence intervals of Pearson correlation coefficient |
cor.rep |
Estimating gene expression correlation from replicated microarray data |
cor.rep.bootci |
Bootstrap Confidence Interval for multivariate correlation estimator from replicated gene microarray data |
cor.rep.pv |
Multivariate correlation estimator from replicated gene microarray data |
corfdrci |
Two-stage screening procedure for screening gene pairs based on Pearson correlation statistic |
corfdrci.inv |
Inverse screening procedure based on Pearson correlation coefficient |
dat |
Part of galactose metabolism data. Ideker et al. Science, 292:929-934 |
getBM |
Generate Pajek compatible matrix from screened gene pairs |
kendall.confint |
Asymptotic confidence intervals of Pearson correlation coefficient |
kendallfdrci |
Two-stage screening procedure based on Kendall correlation coefficient |
ncclust |
Network constrained clustering |
pcor.confint |
Asymptotic confidence intervals of partial correlation coefficient |
pcorfdrci |
Two-stage screening procedure based on partial correlation coefficient in Graphic Gaussian Model framework |
pcorfdrci.inv |
Inverse screening procedure based on Kendall correlation coefficient |
sm.name |
Extract gene names from data matrix |
tdclust |
Traditional clustering |