prochlo {seqinr}R Documentation

Zscore on three strains of Prochlorococcus marinus

Description

This dataset contains the zscores computed with the codon model on all CDS from 3 strains of Procholorococcus marinus (as retrieved from Genome Reviews database on June 16, 2005)

Usage

data(prochlo)

Format

List of three dataframes of the zscore of each of the 16 dinucleotides on each CDS retrieved from the specific strain.

BX548174
strain adapted to living at a depth of 5 meters (high levels of UV exposure) base model on each intergenic sequence
AE017126
strain adapted to living at a depth of 120 meters (low levels of UV exposure)
BX548175
strain adapted to living at a depth of 135 meters (low levels of UV exposure)

References

Palmeira, L., Guéguen, L. and Lobry JR. (in prep) UV-targeted dinucleotides are not depleted in light-exposed Prokaryotic genomes.

citation("seqinr")

See Also

zscore

Examples

data(prochlo)

[Package seqinr version 1.0-4 Index]