ontologySimilarity-package | Functions for Calculating Ontological Similarities |
get_sim | Calculate the group similarity of a set of row/column indices |
get_similarity_rank_matrix | Get matrix of similarity rank from similarity matrix |
get_sim_grid | Get similarity matrix from a term-to-term similarity matrix between two sets of term sets |
get_sim_mat | Get similarity matrix from a term similarity matrix |
get_sim_p | Get similarity p-value |
get_sim_sample | Get random sample of group similarities for groups of given size |
get_sim_to_profile_p | Get p-value for best-match-average similarity between two term sets |
get_stratified_sim_p | Get stratified similarity p-value |
get_stratified_sim_p_sorted | Get stratified similarity p-value (sorted) |
get_term_set_to_term_sims | Get 'term sets to term' similarity matrix |
get_term_sim_mat | Get term-term similarity matrix |
lin | Calculate Lin similarity score of two term sets |
ontologySimilarity | Functions for Calculating Ontological Similarities |
resnik | Calculate Resnik similarity score of two term sets |