Simulation and MCMC inference in landscape genetics

Documentation for package `Geneland' version 1.0.5

Geneland-package	Simulation and inference of a spatial statistical model for landscape genetics.
FormatGenotypes	Formatting file of genotype data.
Fstat	F statistics
Geneland	Simulation and inference of a spatial statistical model for landscape genetics.
mcmcFmodel	Inference in a spatial statistical model
PlotDrift	Plot the drift factors
PlotFreq	Plot the trace of allele frequencies in present time population and optionnaly print it.
PlotFreqA	Plots allele frequencies in ancestral population along the MCMC run and optionally prints it
Plotnpop	Plot of number of populations along the MCMC run
Plotntile	Plot of number of tiles along the MCMC run
PlotTessellation	Maps of posterior probability of membership
PosteriorMode	Map of mode of posterior distribution of population membership
PostProcessChain	Computation for maps of posterior probability of population membership
setplot	Set graphical parameters for geographical maps so as to have equal ratio for horizontal and vertical axis. Internal function.
simFmodel	Simulation of multi-locus genetic data from the spatial F-model