GSEA.t2 {SAGx}R Documentation

Gene Set Enrichment Analysis

Description

Based on a list of gene sets, e.g. pathways, in terms Affymtrix identifiers, these sets are ranked with respect to regulation in between two groups of chips.

Usage

GSEA.t2(probeset = probeset, X = x, Y = y, pway = kegg, cutoff = 5)

Arguments

probeset the Affymetrix identifiers
X data for group 1
Y data for group 2
pway a list where each component contains a vector with probeset IDs
cutoff Gene sets with less than cutoff members are excluded

Value

A list with the component score, pvalue, corr.pval.

Note

Experimental function. NOT COMPLETED.

Author(s)

Per Broberg


[Package SAGx version 1.6.0 Index]