Bayesian Output Analysis Program (BOA) for MCMC

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Documentation for package `boa' version 1.1.5-2

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boa.chain.add Add MCMC Sequence
boa.chain.collapse Concatenate MCMC Sequences
boa.chain.del Delete MCMC Sequences
boa.chain.eval Formulate New Parameter
boa.chain.import Import MCMC Sequence
boa.chain.reset Reset MCMC Sequences
boa.chain.subset Subset MCMC Sequences
boa.chain.support Set Support for Parameters
boa.init Start Session
boa.license Licensing Information
boa.load Load Session
boa.menu Interactive BOA Menu
boa.par Global Parameters
boa.plot Plot Parameters in MCMC Sequences
boa.plot.acf Plot Autocorrelation Function
boa.plot.bandg Plot Brooks and Gelman Multivariate Shrink Factors
boa.plot.close Close Graphics Windows
boa.plot.density Plot Density Functions
boa.plot.gandr Plot Gelman and Rubin Shrink Factors
boa.plot.geweke Plot Geweke Convergence Diagnostics
boa.plot.history Plot Parameter Estimation Histories
boa.plot.open Open Graphics Windows
boa.plot.par Set Plotting Parameters
boa.plot.title Add Plot Title
boa.plot.trace Plot Trace Histories
boa.print.acf Print Autocorrelation Functions
boa.print.cor Print Correlation Matrices
boa.print.gandr Print Gelman and Rubin Convergence Diagnostics
boa.print.geweke Print Geweke Convergence Diagnostics
boa.print.handw Print Heidelberger and Welch Convergence Diagnostics
boa.print.hpd Print Highest Probability Density Intervals
boa.print.info Print Information about MCMC Sequences
boa.print.par Print Global Parameters' Descriptions and Current Values
boa.print.randl Print Raftery and Lewis Convergence Diagnostics
boa.print.stats Print Summary Statistics
boa.quit Quit Session
boa.save Save Session
boa.version Version Information
line BUGS Line Example
line1 BUGS Line Example
line2 BUGS Line Example