plot.ibdreg.unexpect {ibdreg}R Documentation

Plot unconstrained and constrained linkage tests to indicate areas of unexpected allele sharing

Description

Plot the -log10(pvalue) of the unconstrained and constrained linkage tests to indicate areas of unexpected allele sharing

Usage

plot.ibdreg.unexpect(x, status.method="AA", ...)

Arguments

x an ibdreg object
status.method Character string indicating which affection status for relative pairs ("AA", "AU", or "UU") is to be examined for unexpected IBD sharing. Character string indicating which relative pairs to display linkage tests for: "AA", "AU", or "UU". These correspond to: Affected-Affected, Affected-Unaffected, and Unaffected-Unaffected, respectively.
... extra parameters for the plot method. This method looks for a 'title' parameter.

Details

Value

nothing is returned

Side Effects

References

See Also

plot.ibdreg, ibdreg

Examples



[Package ibdreg version 0.1.1 Index]