colTDT | Genotypic TDT |
colTDT2way | Genotypic TDT for Two-Way Interactions |
colTDTinter2way | Genotypic TDT for Two-Way Interactions |
compPermTDT2way | Permutation-Based gTDT for Two-Way Interactions |
findLDblocks | Identifying LD blocks |
freq.hap | Examples for Haplotype Frequencies for Simulation |
getLD | Computation of LD Measures |
LDdata | Simulated LD Block Data |
mat | Computation of LD Measures |
ped2geno | Transformation of Ped-File |
plot.getLD | Plotting a getLD Object |
plot.LDblocks | Plotting a LDblock Object |
print.colTDT | Genotypic TDT |
print.colTDTepi | Genotypic TDT for Two-Way Interactions |
print.LDblock | Identifying LD blocks |
print.tdt | Genotypic TDT |
print.tdtEpi | Genotypic TDT for Two-Way Interactions |
read.pedfile | Reading a Ped File |
simuBkMap | Examples for Haplotype Frequencies for Simulation |
step3way | Examples for Haplotype Frequencies for Simulation |
tdt | Genotypic TDT |
tdt2way | Genotypic TDT for Two-Way Interactions |
trio | Generate Trio Data Format Suitable for Trio Logic Regression |
trio.check | Check Case-Parent Trio Data for Mendelian Errors |
trio.gen.err | Genotype Data for Trios |
trio.gen1 | Genotype Data for Trios |
trio.gen2 | Genotype Data for Trios |
trio.ped.err | Genotype Data for Trios |
trio.ped1 | Genotype Data for Trios |
trio.ped2 | Genotype Data for Trios |
trio.sim | Simulate Case-Parent Trios with Population Disease Risk Dependent on SNP-SNP Interaction |