Processing and Simulating Genotype Data for Trio Logic Regression


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Documentation for package ‘trio’ version 1.0.16

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colTDT Genotypic TDT
colTDT2way Genotypic TDT for Two-Way Interactions
colTDTinter2way Genotypic TDT for Two-Way Interactions
compPermTDT2way Permutation-Based gTDT for Two-Way Interactions
findLDblocks Identifying LD blocks
freq.hap Examples for Haplotype Frequencies for Simulation
getLD Computation of LD Measures
LDdata Simulated LD Block Data
mat Computation of LD Measures
ped2geno Transformation of Ped-File
plot.getLD Plotting a getLD Object
plot.LDblocks Plotting a LDblock Object
print.colTDT Genotypic TDT
print.colTDTepi Genotypic TDT for Two-Way Interactions
print.LDblock Identifying LD blocks
print.tdt Genotypic TDT
print.tdtEpi Genotypic TDT for Two-Way Interactions
read.pedfile Reading a Ped File
simuBkMap Examples for Haplotype Frequencies for Simulation
step3way Examples for Haplotype Frequencies for Simulation
tdt Genotypic TDT
tdt2way Genotypic TDT for Two-Way Interactions
trio Generate Trio Data Format Suitable for Trio Logic Regression
trio.check Check Case-Parent Trio Data for Mendelian Errors
trio.gen.err Genotype Data for Trios
trio.gen1 Genotype Data for Trios
trio.gen2 Genotype Data for Trios
trio.ped.err Genotype Data for Trios
trio.ped1 Genotype Data for Trios
trio.ped2 Genotype Data for Trios
trio.sim Simulate Case-Parent Trios with Population Disease Risk Dependent on SNP-SNP Interaction