calibrate.cca |
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA) |
capscale |
[Partial] Constrained Analysis of Principal Coordinates or distance-based RDA |
cascadeKM |
K-means partitioning using a range of values of K |
cca |
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis |
cca.object |
Result Object from Constrained Ordination with cca, rda or capscale |
cIndexKM |
K-means partitioning using a range of values of K |
coef.cca |
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA) |
coef.radfit |
Rank - Abundance or Dominance / Diversity Models |
coef.rda |
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA) |
confint.fisherfit |
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data |
cophenetic.spantree |
Minimum Spanning Tree |
coverscale |
Prints a Compact, Ordered Vegetation Table |
orderingKM |
K-means partitioning using a range of values of K |
ordiarrows |
Add Graphical Items to Ordination Diagrams |
ordicluster |
Add Graphical Items to Ordination Diagrams |
ordiellipse |
Add Graphical Items to Ordination Diagrams |
ordigrid |
Add Graphical Items to Ordination Diagrams |
ordihull |
Add Graphical Items to Ordination Diagrams |
ordiplot |
Alternative plot and identify Functions for Ordination |
ordiplot3d |
Three-Dimensional and Dynamic Ordination Graphics |
ordirgl |
Three-Dimensional and Dynamic Ordination Graphics |
ordisegments |
Add Graphical Items to Ordination Diagrams |
ordispider |
Add Graphical Items to Ordination Diagrams |
ordisurf |
Fit and Plot Smooth Surfaces of Variables on Ordination. |
orditorp |
Add Text or Points to Ordination Plots |
orglpoints |
Three-Dimensional and Dynamic Ordination Graphics |
orglsegments |
Three-Dimensional and Dynamic Ordination Graphics |
orglspider |
Three-Dimensional and Dynamic Ordination Graphics |
orgltext |
Three-Dimensional and Dynamic Ordination Graphics |
permutest.cca |
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates |
plot.anosim |
Analysis of Similarities |
plot.cascadeKM |
K-means partitioning using a range of values of K |
plot.cca |
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis |
plot.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
plot.envfit |
Fits an Environmental Vector or Factor onto an Ordination |
plot.fisherfit |
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data |
plot.humpfit |
No-interaction Model for Hump-backed Species Richness vs. Biomass |
plot.metaMDS |
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores |
plot.prc |
Principal Response Curves for Treatments with Repeated Observations |
plot.prestonfit |
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data |
plot.procrustes |
Procrustes Rotation of Two Configurations |
plot.profile.fisherfit |
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data |
plot.rad |
Rank - Abundance or Dominance / Diversity Models |
plot.radfit |
Rank - Abundance or Dominance / Diversity Models |
plot.radline |
Rank - Abundance or Dominance / Diversity Models |
plot.renyi |
Renyi and Hill Diversities and Corresponding Accumulation Curves |
plot.renyiaccum |
Renyi and Hill Diversities and Corresponding Accumulation Curves |
plot.spantree |
Minimum Spanning Tree |
plot.specaccum |
Species Accumulation Curves |
plot.varpart |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
plot.varpart234 |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
points.cca |
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis |
points.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
points.humpfit |
No-interaction Model for Hump-backed Species Richness vs. Biomass |
points.metaMDS |
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores |
points.ordiplot |
Alternative plot and identify Functions for Ordination |
points.procrustes |
Procrustes Rotation of Two Configurations |
points.radline |
Rank - Abundance or Dominance / Diversity Models |
postMDS |
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores |
prc |
Principal Response Curves for Treatments with Repeated Observations |
predict.cca |
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA) |
predict.decorana |
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA) |
predict.humpfit |
No-interaction Model for Hump-backed Species Richness vs. Biomass |
predict.rda |
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA) |
pregraphKM |
K-means partitioning using a range of values of K |
prestondistr |
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data |
prestonfit |
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data |
print.anosim |
Analysis of Similarities |
print.anova.cca |
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates |
print.bioenv |
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities |
print.cca |
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis |
print.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
print.envfit |
Fits an Environmental Vector or Factor onto an Ordination |
print.factorfit |
Fits an Environmental Vector or Factor onto an Ordination |
print.fisherfit |
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data |
print.humpfit |
No-interaction Model for Hump-backed Species Richness vs. Biomass |
print.mantel |
Mantel and Partial Mantel Tests for Dissimilarity Matrices |
print.metaMDS |
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores |
print.mrpp |
Multi Response Permutation Procedure of Within- versus Among-Group Dissimilarities |
print.permutest.cca |
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates |
print.prestonfit |
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data |
print.procrustes |
Procrustes Rotation of Two Configurations |
print.protest |
Procrustes Rotation of Two Configurations |
print.radfit |
Rank - Abundance or Dominance / Diversity Models |
print.radline |
Rank - Abundance or Dominance / Diversity Models |
print.specaccum |
Species Accumulation Curves |
print.summary.bioenv |
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities |
print.summary.cca |
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis |
print.summary.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
print.summary.humpfit |
No-interaction Model for Hump-backed Species Richness vs. Biomass |
print.summary.prc |
Principal Response Curves for Treatments with Repeated Observations |
print.summary.procrustes |
Procrustes Rotation of Two Configurations |
print.varpart |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
print.varpart234 |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
print.vectorfit |
Fits an Environmental Vector or Factor onto an Ordination |
procrustes |
Procrustes Rotation of Two Configurations |
profile.fisherfit |
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data |
profile.humpfit |
No-interaction Model for Hump-backed Species Richness vs. Biomass |
protest |
Procrustes Rotation of Two Configurations |
pyrifos |
Response of Aquatic Invertebrates to Insecticide Treatment |
rad.lognormal |
Rank - Abundance or Dominance / Diversity Models |
rad.null |
Rank - Abundance or Dominance / Diversity Models |
rad.preempt |
Rank - Abundance or Dominance / Diversity Models |
rad.zipf |
Rank - Abundance or Dominance / Diversity Models |
rad.zipfbrot |
Rank - Abundance or Dominance / Diversity Models |
radfit |
Rank - Abundance or Dominance / Diversity Models |
rankindex |
Compares Dissimilarity Indices for Gradient Detection |
rarefy |
Ecological Diversity Indices and Rarefaction Species Richness |
rda |
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis |
read.cep |
Reads a CEP (Canoco) data file |
renyi |
Renyi and Hill Diversities and Corresponding Accumulation Curves |
renyiaccum |
Renyi and Hill Diversities and Corresponding Accumulation Curves |
residuals.cca |
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA) |
residuals.procrustes |
Procrustes Rotation of Two Configurations |
residuals.rda |
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA) |
ripley.subs |
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities |
ripley.subsets |
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities |
RsquareAdj |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
scores |
Get Species or Site Scores from an Ordination |
scores.cca |
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis |
scores.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
scores.default |
Get Species or Site Scores from an Ordination |
scores.envfit |
Fits an Environmental Vector or Factor onto an Ordination |
scores.metaMDS |
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores |
scores.ordiplot |
Alternative plot and identify Functions for Ordination |
scores.rda |
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis |
showvarparts |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
simpleRDA2 |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
spantree |
Minimum Spanning Tree |
specaccum |
Species Accumulation Curves |
specnumber |
Ecological Diversity Indices and Rarefaction Species Richness |
specpool |
Extrapolated Species Richness in a Species Pool |
specpool2vect |
Extrapolated Species Richness in a Species Pool |
spenvcor |
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA) |
stepacross |
Stepacross as Flexible Shortest Paths or Extended Dissimilarities |
stressplot |
Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling |
summary.anosim |
Analysis of Similarities |
summary.bioenv |
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities |
summary.cca |
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis |
summary.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
summary.humpfit |
No-interaction Model for Hump-backed Species Richness vs. Biomass |
summary.prc |
Principal Response Curves for Treatments with Repeated Observations |
summary.procrustes |
Procrustes Rotation of Two Configurations |
summary.radfit.frame |
Rank - Abundance or Dominance / Diversity Models |
summary.specaccum |
Species Accumulation Curves |
varechem |
Vegetation and environment in lichen pastures |
varespec |
Vegetation and environment in lichen pastures |
varpart |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
varpart2 |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
varpart3 |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
varpart4 |
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices |
vectorfit |
Fits an Environmental Vector or Factor onto an Ordination |
vegandocs |
Display Package Documentation |
vegdist |
Dissimilarity Indices for Community Ecologists |
vegemite |
Prints a Compact, Ordered Vegetation Table |
veiledspec |
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data |
vif.cca |
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA) |