Simulation and MCMC inference in landscape genetics

Documentation for package ‘Geneland’ version 2.0.12

Geneland-package	Simulation and inference of a spatial statistical model for landscape genetics.
FormatGenotypes	Formatting file of genotype data.
Fstat	Computes F statistics on a population genetics dataset given as R object
Fstat.output	Computes F statistics on the output of an inference by MCMC simulation
Geneland	Simulation and inference of a spatial statistical model for landscape genetics.
Geneland.GUI	Graphical interface for package Geneland
gl2gp	Geneland to Genepop conversion
mcmcFmodel	Inference in a spatial statistical model
nullify	Simulates null alleles
PlotDrift	Plot the drift factors
PlotFreq	Plot the trace of allele frequencies in present time population and optionnaly print it.
PlotFreqA	Plots allele frequencies in ancestral population along the MCMC run and optionally prints it
Plotnpop	Plot of number of populations along the MCMC run
Plotntile	Plot of number of tiles along the MCMC run
PlotTessellation	Maps of posterior probability of membership
PosteriorMode	Map of mode of posterior distribution of population membership
PostProcessChain	Computation for maps of posterior probability of population membership
show.simdata	Graphical display of data simulated by simdata
simdata	Simulation of georeferenced genotypes under an IBD + barrier model
simFmodel	Simulation of multi-locus genetic data from the spatial F-model