BruteAggreg {RankAggreg}R Documentation

Weighted Rank Aggregation via brute force algorithm

Description

Weighted rank aggregation of ordered lists is performed using the brute force approach, i.e. generating all possible ordered lists and finding the list with the minimum value of the objective function

Usage

BruteAggreg(x, k, weighted = FALSE, index.weights = NULL, distance = c("Spearman", "Kendall"))

Arguments

x a matrix of ordered lists to be combined (lists must be in rows)
k size of the top-k list
weighted boolean, if weights are to be used
index.weights scores (weights) to be used in the aggregation process
distance distance which "measures" the similarity between the ordered lists

Details

The function performs rank aggregation using the old-fashion brute force approach. This approach works for small problems only and should not be attempted if k is relatively large (k > 10). To generate all possible ordered lists, the permutation function from the gtools package is used. Both weighted and unweighted rank aggregation can be performed. Please refer to the documentation for RankAggreg function as the same constraints on x and index.weights apply to both functions.

Value

top.list Top-k aggregated list
fn.score the minimum value of the objective function corresponding to the top-k list
distance distance used by the algorithm

Author(s)

Vasyl Pihur, Somnath Datta, Susmita Datta

References

Pihur, V., Datta, S., and Datta, S. (2007) "Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach" Bioinformatics, 23(13):1607-1615

See Also

RankAggreg

Examples

require(gtools)

# rank aggregation without weights
x <- matrix(c("A", "B", "C", "D", "E",
        "B", "D", "A", "E", "C",
        "B", "A", "E", "C", "D",
        "A", "D", "B", "C", "E"), byrow=TRUE, ncol=5)

(toplist <- BruteAggreg(x, 5))

# weighted rank aggregation
set.seed(100)
w <- matrix(rnorm(20), ncol=5)
w <- t(apply(w, 1, sort))
(toplist <- BruteAggreg(x,5,TRUE,w)) # using the Spearman distance
(toplist <- BruteAggreg(x,5,TRUE,w,"Kendall")) #using the Kendall distance

[Package RankAggreg version 0.1-1 Index]