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| DiffAnalysis | Differential Analysis for paired data |
| DiffAnalysis.unpaired | Differential Analysis for unpaired data |
| est.varmixt | Variance Mixture Estimation |
| fdr.estimate.eta0 | Estimate the Proportion of Null p-Values |
| filterByDefault | Filter applied on data before normalisation |
| Intensity.Norm | Function to compute normalized intensity for each channel |
| LBI | Label Bias Index |
| LocalFDR | Local FDR |
| MeanBySpot | Mean By Spot |
| normalisation | Function to normalize microarray data |