Detection of cross-hybridization events in microarray experiments

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Documentation for package ‘crosshybDetector’ version 1.0.1

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crosshybDetector-package Detection of cross-hybridization events in microarray experiments
computeTm Computing of melting temperature
crosshyb Identify probes affected by crosshybridization
crosshyb.out Output of crosshyb
crosshyb2xls Write corruptor and corrupted probes to files
crosshyb2xls.putative Writing list of analyzed probes to file
crosshybDetector Detection of cross-hybridization events in microarray experiments
crosshybImage Spatial distribution of corruptor and corrupted probes
crosshybMAplot MA-plot
crosshybMCplot Plot of Monte Carlo simulations
crosshyb_func Computing cross-hybrization pvalues
extractBadProbes Extract corruptor and corrupted probes
getSeqs Read sequences
list2ascii Write R list
probeSeq Sequence data
raw marrayRaw example data
rg2ma Convert intensities to ratios